SimpleSearch - Line and FST details


Line specific information

 
Line ID 058E07
Vector Used pAC161
Line Availability available as T3 set from NASC (N405527)
Segregation Analysis 50:47:30
Confirmed for Hit At3g49601
Parent of DUPLO pair 12412
Parent of pair(s) none

Gene hit T16G12

 
Sequence (A. th genome BLAST matches underlined) 
>53-K016086-022-058-E07-8409
GATCCTGTAGATTTCCCGGACATGAAGCCATTTACCCCTCATCCTCCTCTCTTTTGTGTT
TACGTCCTCGTTGGTAACTTTCATTCTTTAGCTTCTTCCTATTTTCATACTCAGCCTCAC
TGTCATCAGAGTCTCTATGGGATCCTCCCTATAGTGAGACGAGGGAATTGCGACNAACTC
CAGTTCCTCGCAAAACGCGCGTCGTAAAATCACATTCGTAGCAAGTTCCTCGCAAATGTT
GCGAGGAACAAGTTGCCTCGCAAAACACACGCAACTTGCAAGGGAAGCAATCCGTAGCAA
ATTCACAGCAAATTTCGGGTCTCGCAAGTTTCGCGCTATGGGATCCTCCCTATAGTGAGA
AT
GenBank Accession AL936741 [GenBank]
Graphic View Graphic view of sequence AL936741 of line 058E07
Predicted Position of Insertion Chr5:6348956 - go to primer design
BLAST e Value 1e-87
Hit Clone Code (BAC ID) T16G12
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g49601

 
Sequence (A. th genome BLAST matches underlined) 
>53-K016087-022-058-E07-8409
TATCCTGTAGATTTCCCGGACATGAAGCCATTTACCCCTCATCCTCCTCTCTTTTGTGTT
TACGTCCTCGTTGGTAACTTTCATTCTTTAGCTTCTTCCTATTTTCATACTCAGCCTCAC
TGTCATCAGAGTCCCTATGGGATCCTCCCTATAGTGAGACTAACCTGAACGTTGGCCGGC
AATCCTAGAGACAGAGTCGAATCAAAATTGCGGAGACGGGAACATAGATCGACTTCGGGT
ACTCACTCTACCAGCTCACATAATCTTATTCTCGGAAGGCAAGAACACCACAGGATCCTC
TCATATAGCGAGACGAAATCTTTGCCACCCGTCTCGGACAAGATCATAAGGGATCCTCCC
TATAGTGAGAGGTGCGAACAAGCTTTGAGTATCAGTGAAATGATAAGCCCCCGCGGGACT
TCAGTCTCCAGCAGATACTCCTCCACTTATCACTGCTGATTGCTCTCGTCAACCTA
GenBank Accession AL936742 [GenBank]
Graphic View Graphic view of gene At3g49601
Predicted Position of Insertion Chr3:18387839 - go to primer design
BLAST e Value 1e-47
Hit Clone Code (BAC ID) T9C5
Hit Gene Code At3g49601 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation pre-mRNA-splicing factor
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37