SimpleSearch - Line and FST details
Line specific information
| Line ID | 058F03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405535) |
| Segregation Analysis | 50:45:26 |
| Confirmed for Hit | At4g27940 |
| Parent of DUPLO pair | 12462 |
| Parent of pair(s) | none |
| Note |
Gene hit T13D8
| Sequence (A. th genome BLAST matches underlined) | >22-K016087-022-058-F03-8409 TGTCCTGTTGATTTCCCGGACTGAAGCCATTTACATTGAATATTCGAGTTTTCATACTCT TACTTATCATTTGGATGTAATATGATCCTCACCACCCAAATAATGATTTTCTACTTATAT AACCTTTTACTTTTGTTTAAAAATCAATTTATGTAAACCTAACACATGCTTAACTTTACT AAATGACTGTGATAATATACTCCAGATGTAATCAATACTACTATGGGATCCTCCCTATAG TGAGANCNNNNNNGCTGNGNTNNNNNNCTCCACATGNAATAAAAACTACTATGGGACCCT CCGTATAGAGAAGACNACTATTTGCCGACGCCACTGTCCTGCTAATAATGACTTCATACA CGCGAGGAGCAACTGCTAGGGGAAGAGATGCCGAAACCCCTATTAGATGATTCTTCGACA TACCTTCCATTATGTATTCTCGTCTGAGACAATAACCCTGATGACTGCTTCAATACTATT GACTAAGGAAGCAGATGACTATGCAACATTTCTCTGCCTCGGTTATTCCCTTAATGGCGG TATTTTGCCCATTAGAACTAGCTACCCAGAATCTTTATGGAACTATCACATGCTCCCCTC TATTGAACCGCCCCCCGCGCTTCTTCAAAATTGGATCACAAAGGGGCAGAACCCTTTAAA GTTCCGCCCCCACCACACCCTTGGAGGATGGAGATCATTTAAACGTCCGCCCGGCGGGGG GAAATTTTCCTTATTTTCGCCCC |
| GenBank Accession | AL936752 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:22251676 - go to primer design |
| BLAST e Value | 1e-84 |
| Hit Clone Code (BAC ID) | T13D8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | failed |
Gene hit At4g27940
| Sequence (A. th genome BLAST matches underlined) | >22-K016086-022-058-F03-8409 TTTCCCGGACTGAAGCATTTACATTGAATATATCATTGTTGAGGCAGAGCGCGCGGAGAA TAGTTGGATTGCTTCGGAAACGTCTCCGTCGTCGTCTCCGGTGGTAATAGAAAGCAGTGA TTTTTCGATAACTGATGGAATGAGAGATGTGAGCGGATTTGGTATAGCTTCTCGACCTCA GTTGGACAAGGGTTTGTCGGAAAACAATATAGGGTTCACGGAAAGAGTTTTCTCTGCCGC CGGAGCTGCGGTTTTGTCCGCCGTTACTCTAAATCCTCTTGACGTTGTCAAGGTAGGAGC TTTCTATTGTTGTCTTGATTCATCTGGGAAATTATATCTTCTTACCGGCGAAGATCTAAT GTTTCTGTTGTGATTTTGTTTATCAGACTCGATTGCAAGCTCAAGCCGCCGGAATGTCGT ACTCTCACCCACTCAGTAACTCCATTGGACGCATGGCATTTTTTGGCCCAAACATGGTAT TGTCTCTGAAATTTTTATTTTGTATGAGTGTTGTTTTAAAGGTGAATACTTTCTACATTT TCACTACTCAGTTATGTAATCAATACGGTTTCGGTTCAGATGTTTGCAGACTTGAGATGT TCTCCTTCATGTGCACGCGCTGGTGTTGAAGGTACTGTTTCTATTTGCCCACCGGATTGT TTCCAGTACAAAGGAACATTTGATGTCTTCACAAGATCATACGACAGGTGAGCATCTNCT TTCATCTTGNTGAATGTCTCGCAGTGTTAAGAAGATGATGATAAGTAGTTGTTTGAGAGG TTTGTTTTTTGTATG |
| GenBank Accession | AL936751 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:13904748 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T13J8 |
| Hit Gene Code | At4g27940 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | manganese tracking factor for mitochondrial SOD2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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