SimpleSearch - Line and FST details


Line specific information

 
Line ID 059B03
Vector Used pAC161
Line Availability available as T3 set from NASC (N405583)
Segregation Analysis 50:28:26
Confirmed for Hit At3g53880
Parent of DUPLO pair none
Parent of pair(s) 91468, 91476, 91477, 91478

Gene hit At3g53880

 
Sequence (A. th genome BLAST matches underlined) 
>18-K027914-022-059-B03-8409
AGCCATATACATTGAATATCTCCTGATACCACGTATGAGAAACTACCTGGGTCCACACCT
AATTTCGTACGGTCATAGATGCAGATGTTATTGTCTCTGCCTGCCACTAGACGATGCTTG
CTCAACCATCCCCCATACACACTAATTCTACCTTTTTGTCATTTGTCGTTATCATTTTAA
TTACGCATATTATTTACCCATCGAAGCGCGGATTCTGTTTTATATTTCCCAAATTCATTA
GCAATCATTTCTATAACCGGATTCTTTAAAACATCGGACTTCCCCACGTTGTTCCAAGTA
TCCCTTTGCCTAATATCCCTGCCACAATCAACATTCACGAAGTGTATATAAATATGACAT
TCGGACCCATTGAATGATTTGGCAATGATTAGTGATATCAAAACCTACTCACATTTGGAT
CGCGGGGGAGATAAACAAACTCAGATAACTATGCTCCCGCCAACAAGTGATACCAACTAT
ACCAAAAAAGAGCGCACGACCCATACCTCACATACCAAAACTACTAATC
GenBank Accession CR770024 [GenBank]
Graphic View Graphic view of gene At3g53880
Predicted Position of Insertion Chr3:19955022 - go to primer design
BLAST e Value 2e-44
Hit Clone Code (BAC ID) F5K20
Hit Gene Code At3g53880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAD(P)-linked oxidoreductase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit F6D5

 
Sequence (A. th genome BLAST matches underlined) 
>18-K013872-022-059-B03-8409
NATGGATCCATGTAGATCTTCCTGACATGAANGCCTTTACACTTGTATATCTCCATGTAG
GATGACGTAAAAAAGTATAAGGGTATAAACGTAATTTCGTAAGGTCATAGTTGCAGATGT
TAGTGTCTCTGCCTGCCGCTATGGGATCCTCCCTATAGTGAGACTATGGGACCCTCCCTA
TTGTGAGGTTATGGGATTC
GenBank Accession AL754935 [GenBank]
Graphic View Graphic view of sequence AL754935 of line 059B03
Predicted Position of Insertion Chr1:27664577 - go to primer design
BLAST e Value 6e-37
Hit Clone Code (BAC ID) F6D5
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit AL754936 [GenBank]


Last Updated on 10.06.2021 13:37