SimpleSearch - Line and FST details
Line specific information
| Line ID | 060E03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405715) |
| Segregation Analysis | 50:48:33 |
| Confirmed for Hit | At1g64190 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3018, 3060 |
| Note |
Gene hit At1g64190
| Sequence (A. th genome BLAST matches underlined) | >21-K114296-0022-060-E03-8409 AGAGATCTCTCTGCGCGTGAACCACATACGCCGGCAACCTAACATGACCTGCCGCTATAT CATACGCACTTTGTTTTTATGGTGGGGCAGCTGGACATCTACTTTTTTTTTTTCCGACAA CAATGGAAAATAGTCTTTCTTTTTAAAAAATTAAAATGCGTATGGGCCCCTTACAAAGAT AACGTATGACTAGAAAAAAAATTTTTNNNNTTAAANNCTTCCCNNATTTCNTCAAAAAGG CGGGGCGCAAAAAAAAANAAAAAAAACTGGGCCNTTACNGGTCNGGCCGTTAGGCNCNNN NNNNAANNNNGNGNNNNNNNGGNNGGTNGGNTGTTGTTTTCACCNAATGGGGGGATGATC CNTTTTTTGTGTGGATTTTTGAGGGGGAGGGGGGGGGAGATAATAAAATAAGTACGCTTT TAAGAATTTAATATTGGA |
| GenBank Accession | HE664227 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:23825611 - go to primer design |
| BLAST e Value | 2e-04 |
| Hit Clone Code (BAC ID) | F22C12 |
| Hit Gene Code | At1g64190 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 6-phosphogluconate dehydrogenase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g20510
| Sequence (A. th genome BLAST matches underlined) | >69-K013875-022-060-E03-8409 NATTGATCCATGTAGATCTTCCCTGTACATGAAGCCTTTACATGTAGGAATGTGGTCTTT GATAAGATACGTTTAAAAGGCAAGATCAAGCTGTCACAGGGCTCATGATCAAGCTGCAGA ACACAATACAAGTGGAAATTGAATTGCTCACCCCTAAGCATCACAGAGAGTGTTATCAAT TCTTCCAACTATATATAACCTATGGGATCCTCCCTATAGTGAGACCCTAGNCACCCACCT ACTCATTGGAGAGCCTGACGACGGAAAACGACCCCAAAAAGATCCCTTGGATCAAATGGG TCGCCTATGGGATCCTCCCTATAATGAGCCTCCCCTTTATTCTTCGGTGCACCTCCCCAC CACCCCCTACTCTCGCGCGCCCCCCCTTTTCCCGCCCCCCTTCCATTTCTCCAATACCCC CCCCCTTACTCCACCCCCCCTCTTTTTCCCCCCCCTCGCCCCCCCCCCTCCAATATTCAA CCCCATCTTTCACCATCTCCCACGCTCCATCCCCCCAATTCTTATTTCCTTTTTCC |
| GenBank Accession | AL755000 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6939816 - go to primer design |
| BLAST e Value | 6e-68 |
| Hit Clone Code (BAC ID) | F7C8 |
| Hit Gene Code | At5g20510 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | alfin-like 5 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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