SimpleSearch - Line and FST details
Line specific information
| Line ID | 061B06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405778) |
| Segregation Analysis | 50:48:39 |
| Confirmed for Hit | At3g21610 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6900, 6978 |
| Note |
Gene hit At3g21610
| Sequence (A. th genome BLAST matches underlined) | >42-K016088-022-061-B06-8409 ATTGTAATACAGGTTGCGGCACGTGGTGATTTTAGGATGCGTGGTATCTTACTTAATGAG GATGCTTAGCTATGGGATCTTCCTATAGATGAGAATCCTCCCTATAGTGAGTACCACTCN ATCTTGCTTCTCCTATGTTTTTCCACCTACAAATGCATAAGCCCGGAGCTGCTTTCCAGA ACATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCCTATAGTGAGAGTCGGCTATG GGACCCTCTCTATACAGGGAAAAGACTGGAACCACCTTGGGGCCCTCCCACGGAACGATG CACACATCAAGGTCTCCGATACCCCGGATGGCGAGCGTCCGGCAGCACCGTAGCGCCCAC CAAAACCATGGAGGCCGGCAGGCGATAGCTCACCGGCTGAATATACGGTTACGAGTCAGA ACGGGGACGAGAGACCACAATAGAATACCAACTATAACGCAAAAAATCAAAATTAAAAAG GAAACAAACAAGCAAAAACGGGAAGGAAAACACAAAACAAGGCAAACGAACAAAAAATAA ACAGGAAAATGAAGAAACAGAAAAATCAAGGAAAAAGAGGAGAAAAAAAAAAAAAGAAAA GGAGAAAAGAAAAATAAACGAAACGAACGGGAAAGAAACAAAAAATAAAACGAAGGGAAA GAACGAAACGACCAGAAGACAGAGAAGGGAAAGAACGAGAAAAAGGCAACGAGGGAAGGA GGGAAGGGGCAGAGGGGGCAACAAAAGCGGGGAGGAGGCGCGGCGGTGCACGGGCAGGAA GGCCGCGCAAGAAGAAAAAAGAGAGAGAACAAGGGA |
| GenBank Accession | FR802001 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:7609448 - go to primer design |
| BLAST e Value | 2e-12 |
| Hit Clone Code (BAC ID) | MIL23 |
| Hit Gene Code | At3g21610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Acid phosphatase/vanadium-dependent haloperoxidase-related protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g07795
| Sequence (A. th genome BLAST matches underlined) | >42-K016089-022-061-B06-8409 CCTCCTGTTGCTGGTCCATTTCCTAGAGGATCGCAGGTTCAGCCGACGCCTCAAAATGGA TTTGTTGTGCGAATGGTGCGACCGGGATTTAGAGTTAGAATAGCGGGGAAGACTTGACCT CAGGCAGCGTGAAACCAGTTTATTTCTTTCGATGTAGTGGCCCGATTGCCTATGGGATCC TCCCGTATAGTGAGAAAAGTGATACATCACCTAATCCACTGTGATTTCCAATGAATATAT GCCATCATCAGAATTCAAATCTAATTGTTGGATGTCGTCGAAAAAAGAAGAATCAATATT TATGACCTGGATGTCCCTCTAATATATTCCCTATGGGACCTCCCCAATAGGG |
| GenBank Accession | AL936817 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:3493367 - go to primer design |
| BLAST e Value | 2e-73 |
| Hit Clone Code (BAC ID) | T5E7 |
| Hit Gene Code | At2g07795 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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