SimpleSearch - Line and FST details


Line specific information

 
Line ID 064E04
Vector Used pAC161
Line Availability available as T3 set from NASC (N406100)
Segregation Analysis 50:45:43
Confirmed for Hit At1g43610
Parent of DUPLO pair none
Parent of pair(s) 83679, 83685, 83691, 83692
Note

Gene hit At5g38430

 
Sequence (A. th genome BLAST matches underlined) 
>94-011522-rosso-E4-oriL
TTTGATCCATGTAGCATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGACGC
AATTCCCATGTAAATGATAGTTTAACGAAGGCGGAGGGAGAGCGAAACCCTATAAGAACC
CTAATTCCCTTATCTGGGATCTATACTTTCGGGTTGAGAATCGAGTAANANGNGAGAAAA
ATGGCTTCTATGATATCCTCTTCAGCTGTGACTACAGTCAGCCGTGCTTCTACGGTGCAA
TCGGCCGCGGTGGCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCCAGTTAAGAAG
GTCAACACTGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAAGTGCATGGTGACG
GGGTTCGGCATTCTGAATCTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCGGCTATGG
GATCTATACTTTCGGGTGGACAATC
GenBank Accession FR802053 [GenBank]
Graphic View Graphic view of gene At5g38430
Predicted Position of Insertion Chr5:15385032 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribulose bisphosphate carboxylase (small chain) family protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At1g43610

 
Sequence (A. th genome BLAST matches underlined) 
>29-K026596-022-064-E04-8409
CTCTGATTGACAGTAATTAGATTTGATTCATAGTTTTGTATGGGATCCTCCCTATAGTGA
GAGGGCTTCGTACTGATCCTCATGGGACTTTTTTCATCATCCGTCGGATGATGTCGCCAG
AGATACTATCAATCGATGAGATCAACCCACGCTCCGGACAGGCGCGCACCCCTATCGCAA
AGTATTTGAACGCACGTATGGGATCCTCCCTATAGTGAGCGGGATTAGTCAGTTGTTTGG
GGGGAAAGTTTTTTCAATTCACAAATGTAGATGTCCGCAGCGTTATTATAAAATGTAAG
GenBank Accession CR396160 [GenBank]
Graphic View Graphic view of gene At1g43610
Predicted Position of Insertion Chr1:16425283 - go to primer design
BLAST e Value 1e-05
Hit Clone Code (BAC ID) T10P12
Hit Gene Code At1g43610 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR396160 [GenBank]


Last Updated on 10.06.2021 13:37