SimpleSearch - Line and FST details
Line specific information
| Line ID | 065A08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N406152) |
| Segregation Analysis | 50:48:48 |
| Confirmed for Hit | At2g17440 |
| Parent of DUPLO pair | 2524 |
| Parent of pair(s) | none |
Gene hit At2g17440
| Sequence (A. th genome BLAST matches underlined) | >57-011560-strizhov-A8-oriL TTTTTGATCCATGTAGCATTTCCCGGACATTGAAGCCATGTAAAAAGTGTTTGGACTGGA AATGTTTCAACTTTTTGATAGAATCTGAGGTTAAGATTTATATAGTGCTTTTCACTGTGG TTAGTTTGCTTTTTCAATGGAATCTAAGCTTGACATTTCATGTGTTTACAATGTGTTCCA ACGGAGCTCTGTCTTGTCTCTAATTGCAGTGGAATCTACTTATTATGTGTGTGTAGGCAA TGATGGGGAAAAGATGAGTCTCATACAACTTGCTATGCGACCCTCCCTATAGGGACTCCC TCTACTCACAAAGTATTTGAACGCAGGTACAATCGAGCCTACGTTCACGGTACCGGGCCC CCCCTCGAGGTCGATCCAACCCCTCCGCTGCTCTAGTGCAGTCGGCTTCTGACGTTCAGT GCAGCCGTCTTCTGAAAACGACATGTCACACAAGTCCTAAGTTACCCGACAGGCTGCCGC CCTGCCCTTTTCCTGGCGTTTTCTTGTCGCGTGTTTTAGTCGCATAAAGTAAAATACTTG CGACTA |
| GenBank Accession | AL755045 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:7572067 - go to primer design |
| BLAST e Value | 2e-86 |
| Hit Clone Code (BAC ID) | F5J6 |
| Hit Gene Code | At2g17440 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | plant intracellular ras group-related LRR 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL755045 [GenBank] |
Gene hit At1g63860
| Sequence (A. th genome BLAST matches underlined) | >57-011561-strizhov-A8-35St CTGGACGTAGGGATGACGCACAACTCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTGACGAGATGTGTTGACGGGAACACCTACTATAAAATGT CGTGAACCAAAATGGTCTGATGTTTAACCAGGCGTGAGTGAGATAATACGGGCTATGCTT GCTGAGAGCGCGCCTCCCTCTTGGTGACGCGGACCATAGCTAGCGATTACAGGCGATGGC GACTAATGCTACATGGCCCGGTCCAAGAAGCGCGAGCCGACGGACCACAGATCACAAAGA ACTCCTGGACCTCGAATGGGTTGGATGAGGTATACCACGTGGGGTGTGCATCCTATGAAC AAGCTCTCGAGATCTTATGTATATATGCTTTTAGGAAAAGCTATCCACAAAAGGGTTTTC AATGGCTTGCATTAAGAGTAACACAGCTTTGTGGTAAACTTCCATTGGGTCTCTGTATGG TGGGTTCATCTTTACCTGGGAAGACTGAATAATGATGGGAAGAAGTAATCTGCA |
| GenBank Accession | FR802081 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:23704739 - go to primer design |
| BLAST e Value | 2e-92 |
| Hit Clone Code (BAC ID) | T12P18 |
| Hit Gene Code | At1g63860 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Disease resistance protein (TIR-NBS-LRR class) family |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
