SimpleSearch - Line and FST details


Line specific information

 
Line ID 065B11
Vector Used pAC161
Line Availability available as T3 set from NASC (N406167)
Segregation Analysis 50:41:33
Confirmed for Hit At5g45870
Parent of DUPLO pair none
Parent of pair(s) 18408, 72452, 72460

Gene hit At5g45870

 
Sequence (A. th genome BLAST matches underlined) 
>82-011560-strizhov-B11-oriL
TTTGGATCATGTAGCATTTCCCGGACACTGAAGCATTTACAATCGACTATATAATCAAAA
AACATGAGGGCAGCTCACGCTACAGTTGTTCCTTGCGGGGGATTCGACATAATAACTTTA
CCTTTTACATGTTGTTAAGCTGCACCCTTCACCTCCCAAACCAGGATTTTGGTATTTGTG
AACCACCGAACCCTGCTTATCGGGAGTCATGCTGATCACCATTACATGATACTCCTAGAC
ATGTTCACCTAATCTTTACTATGGGATCCTCCCTATAGAGACTCGTACAACTTTAGGGAT
CCTCCCTATAGTGAGTCGTATTACTC
GenBank Accession FR802088 [GenBank]
Graphic View Graphic view of gene At5g45870
Predicted Position of Insertion Chr5:18606628 - go to primer design
BLAST e Value 0.023
Hit Clone Code (BAC ID) K15I22
Hit Gene Code At5g45870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PYR1-like 12
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR802088 [GenBank]

Gene hit At5g48250

 
Sequence (A. th genome BLAST matches underlined) 
>82-011765-strizhov-B11-35St
CATTCAAGGGCGTAAGGGATCGACGTATCAATCCACTATCCTTCGCAAGACCCTTCCTCT
TATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTC
CCGCCTTCGGTTTAAACTATCAGTGTCCATATTGACCAATTGGTGTTTTTCTCATTTGGT
TTTTTGTAAAGTCAAAGCAAAGACTATTGTTGTGATTGGGCTTTTAAGCCTTAAAGCATC
TAAAAGAAGACGCTTTTGAGAATCCAGAATCGGAAAAGTTCCACTTGTGCCTTGTAGATC
GCGAGTACGGCTCTTTGTCTACACGCGAGCGCGTGACTTCATACTCATAAAAATATCTTT
AGGGTCCTTAGAAAATGGGTTCTTTTGAACTTTTTACCCAATGTTTCTATGGGATCCTCC
CTATAGTGAG
GenBank Accession AL755057 [GenBank]
Graphic View Graphic view of gene At5g48250
Predicted Position of Insertion Chr5:19564044 - go to primer design
BLAST e Value 5e-130
Hit Clone Code (BAC ID) MIF21
Hit Gene Code At5g48250 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation B-box type zinc finger protein with CCT domain-containing protein
Insertion Classification Promoter
Confirmation Status unknown
Other FSTs Supporting this Hit AL755056 [GenBank]


Last Updated on 10.06.2021 13:37