SimpleSearch - Line and FST details
Line specific information
Line ID | 065B12 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N406168) |
Segregation Analysis | 50:48:35 |
Confirmed for Hit | At3g09050 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g48250
Sequence (A. th genome BLAST matches underlined) | >90-011765-strizhov-B12-35St AACTATGGGCGTAAGGGACGACGCTACAATCCACTATCCTTCGCAAGACCCTTCCTCTAT ATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCC CGCCTTCGGTTTAAACTATCAGTGTCCATACCGACCAAATGCCGTTTTCTCTCATTTGGT ACCCTGCAAAGCCACAGCAAAGACTACTGTTGTGATCGGACTTTCATGCCTTAAAGCATC TAAAAGAAGACGCTTTTGAGAATCCACAATCGGACAAGCTCCGCTTGAGCCTTGTAGAGC GCGAGTACGGCTCTTTGTCTACACGCGAGCGCGTGACTCCATACTCATAAAAATATCCTT AGGGTCCTTAGAACATGGGTTCTTTAGAACTTTTTACCCAATGTTTCTATGGGATCCTCC CTATAGTGAGTCGTATCACTC |
GenBank Accession | FR802090 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:19564044 - go to primer design |
BLAST e Value | 1e-81 |
Hit Clone Code (BAC ID) | MIF21 |
Hit Gene Code | At5g48250 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | B-box type zinc finger protein with CCT domain-containing protein |
Insertion Classification | Promoter |
Confirmation Status | unknown |
Gene hit At3g09050
Sequence (A. th genome BLAST matches underlined) | >90-011560-strizhov-B12-oriL ATGATCCATGTAGCATTTCCCGGACATGAAAGCCTTTACAATTGAATAATAGGCGGCCTG TCCATGTAAATGGCTACATTGCTAATCTGGCCAATTTATAAAGAAATCTATGCGTGGAAG TCTGACTTTATTGTAATCAAGAAAAACTGAACCCAGTCTATATTACTGTCTCAAATATAA GGTCTTTTATGCAAATACTTTAAAACTCAAAACTGGTTTTGGATAATGCGTAAACTAAAT TAAAAAACAAGAGGTGGGTTACTCTAAAACGAGCCTTCTTCTTCTTGGTTGAAAAAAACA TAGAAGATGATGAACACACTTTATGCATTTAACACAACCTTAACACCAAACTTTCATGTT CTTTGTAATGCCTCGAGACATTCTCTTTACCGACCCCAATTTCTCTGTCTCTCCAAATCG GGAGACGGAACTTCAGATTCTGATTCTGATCCCGACCCTNCAAAACCCTAAGGCGATACT CTCATGCAAGAACTCTTATCTATGGGATCCTCCCTATAGAGAGTC |
GenBank Accession | AL755058 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:2764612 - go to primer design |
BLAST e Value | 1e-158 |
Hit Clone Code (BAC ID) | MZB10 |
Hit Gene Code | At3g09050 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | 8-amino-7-oxononanoate synthase |
Insertion Classification | Promoter |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |