SimpleSearch - Line and FST details
Line specific information
| Line ID | 069C05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N406557) |
| Segregation Analysis | 100:72:46 |
| Confirmed for Hit | At5g09950 At5g09960 |
| Parent of DUPLO pair | 2215 |
| Parent of pair(s) | none |
Gene hit At5g09950
| Sequence (A. th genome BLAST matches underlined) | >35-011759-strizhov-C5-8409 NTGATCCATGGTAGATTTCCCGGACATGAANGCATTTACAATTGAATAACCTCAGAGTTT GCGGTGATTGCCACTCTGCCTTCAGTATATATCAAAGATCGAAGGGAGACAGATAATTCT AAGGGATTCAAACAGGTTTCATCATTTTCAAGACGGTGCATGTTCTTGTAGTGATTTCTG GTGATACCATGAGTCTCAAAGGTATGAAGACCATCAACCTCCAATCGAGATTCCTTTTAA ATCTCTTATTCATGTATGCTCTGTTTCTTCAGATGATTTTACTTGGATTCAGCATTCATT GACTTAAACCATAGTTCTTTCCCATATGGAATGCGAAGTTCAGATGCATCAAATCAGTGA GTTACAATTTTTATCCTTTATATATTAACCTTAAACTTTGTCTGGCAAGTTAAGAATCTA TTTTCTATTTTCGAAAATATGTGTGAAAAAGCTCAAGGCTCATATGACATTATATTGAGT GGATTTTTCCAATAACAGTGACCCAAAAAATCTTGCTTAACAATCGCAAAACTTTGGATA TTAGTATTGCTTATTCTTTATAAACTGAATGGCTCTTCTCTTATTCTGNGTAAGTGAGTT GGGCGTTTGAAGAGCTGCAAGTGCCCGTTGAAAGAAGGGATTTGGCTTTTCTAAGGGTTA CAAAAATGAAGGGCTCATGTCTTA |
| GenBank Accession | AL755311 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:3103019 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MYH9 |
| Hit Gene Code | At5g09950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g09960
| Sequence (A. th genome BLAST matches underlined) | >35-011758-strizhov-C5-35St TGGCGTAAGGGATGACGCATCAATCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT CGGTTTAAACTATCAGTGTTTGAACCGAGGAAGAGCTCATTAAGCCACCCGAGTCAGCAA CATCAACTGCTGAGCTTACCACGGTCCAAAGTGAAAACCAACGAGAGTTCTCTCCCAGCC ACCATCATCAACCACATTCTCCTTCTGTAAGATTCTTCACCATTATTTGGTTTATATCAT ATTATTCCTTAATTATATTTGCATTACTATCATTAAGACATTTAGAGGCATATTACTATA TTAGCACATGGATTTGTAATCTTGCAATCTATATACAGTATTAAAATTTTGAATAGTTGT ATTTGAGCTGGTAGTGATTATCACTGTGGAATAGATGAGAATTTGGTGTGGTTGTTTTTT TTTGACAGACGAGGAGAAGTATGTTCAGCTGCTTTAACTGGTGCGTTAAAGCTTGAAGAT TTCTTCTAGAGCAAAGTAGCAGGTTTATTATTGACTTGAGATTCGGAATGGGGAATGTGT TAAATGTCATGACACTTTAATATATGGTCCAAATCCATTTTCTTTTTTCTTTGGGGAACC TTATAAGCTCTATTACAAGGAANAGATATGGGGGGAAATTTAAGTTTCACCAAAACCTTA ATCCGCTCTATAAGTACACCCTTCTGGTTTATTTAAGGGAAAAACATGGGCCGGGGATCC CAATGAAAAAGATTACTGGGCCACAAAAACCTAAAAATTTTTTTTTGAATAAGCCAGGGG GCCTGGAGAGACCAAAAAAATTAAAAAGGCCTTTTTGGGTTTTAAGGGGCTTTAATGGGC CCAACAA |
| GenBank Accession | AL755310 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:3107270 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MYH9 |
| Hit Gene Code | At5g09960 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | sorbin/SH3 domain protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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