SimpleSearch - Line and FST details


Line specific information

 
Line ID 071G03
Vector Used pAC161
Line Availability available as T3 set from NASC (N406795)
Segregation Analysis 125:56:34
Confirmed for Hit At4g36070
Parent of DUPLO pair none
Parent of pair(s) 5334, 5406

Gene hit F21F14

 
Sequence (A. th genome BLAST matches underlined) 
>23-011735-strizhov-G3-35St
CTGACGTAAGGGATGACGCACAATCTCCACTATGCCTTCGCAAGTAGCCCTTGACTCCTA
TCTTATGAAGTCGCATTGTATTTGGAGAGGACTAGGTGACCGGGCATCTAATTATCGTTA
CCCGCCTTCGGTATTAAACTATCAGTGTTACTATGGGATCCTCCCTATAGTGAGTCGTAT
TACTCACTGTGGTGTGGCAGAATCTAATATACCCTGAATGGTGAGAGCGGATATAACTAT
ATATATTAGCACTCGAGCTTGTGAGACTAATGACTTTATCCTAAGCTTAAACTGTTGCTG
GCCAACTATGAGTCATGGAGCCTGACATAAAAGAGTTTCTCCCTTTAGTNATGCTCTTCT
ATGGGATCCTCCCTATAGTGAGTCGCACTACTATGGCACTCTACCTATAGAGACGCGAAT
AATTAATACTACTATAACTAACTGCTCTACCGTTACCTTGACTCTCGACAATCTCTTATA
GCACACATCGTTAACCAAACTACAGCAGCATGACCTAATCTCTCTCTC
GenBank Accession FR802216 [GenBank]
Graphic View Graphic view of sequence FR802216 of line 071G03
Predicted Position of Insertion Chr3:22932276 - go to primer design
BLAST e Value 5e-28
Hit Clone Code (BAC ID) F21F14
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At4g36070

 
Sequence (A. th genome BLAST matches underlined) 
>23-011734-strizhov-G3-oriL
TTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGAAATT
TCACTCCTGCCATTTTCACAAAATCACCTCCATTATACTCCGTTGCGCCTGAAGGGACGA
AACGTGGGTCGGGACCTGATTCACACGTTTGGAGAATTGCGGCCAACCCTATACATTCTG
CTTTGCGAGGAGAAGCACCTTTTTGGGATATGACTCCAGACGGATTTTTCAGGGAGGGGT
ATGGTATCCTTCCTATAGGGGGTCGGAATGCTCACACATATGGATTTGCAATTTCCAAGC
ATTGAATCAAACTGAATCGTACCTACCTCTGGCTTCATGTCGCGGTGAACTATGGGATCC
TCCCTATAGTGAGTCGTATTA
GenBank Accession BX649687 [GenBank]
Graphic View Graphic view of gene At4g36070
Predicted Position of Insertion Chr4:17058295 - go to primer design
BLAST e Value 2e-36
Hit Clone Code (BAC ID) T19K4
Hit Gene Code At4g36070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calcium-dependent protein kinase 18
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37