SimpleSearch - Line and FST details


Line specific information

 
Line ID 076C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N407228)
Segregation Analysis 50:42:39
Confirmed for Hit At3g57200 At5g57010
Parent of DUPLO pair none
Parent of pair(s) 96645

Gene hit At3g57200

 
Sequence (A. th genome BLAST matches underlined) 
>27-011889-strizhov-C4-8409
GTGATCCATGGTAGATTTCCCGCACATGAATGCCTTTACAATTGAATGTAGCCTGACACC
TAACTATATCACATCAACAAATGATGACTCTAGCAGCCTACATGAAGGGAGATACTCATA
GGGGACCGATGCATACTTGATGATTCTATCACTTGGAGATCGAAAGCTTTGTGTGCCAGA
TCGGACTACTGTGGGATCCTACCTATAGCGAAGCCGATGTACTCACAGAGTCTGCTGTAT
CAAGGTGGGCAAGAGCTGGAACAAAAGCAGCAAAGGTAATAATTAATTATTCACTATGGG
ATCCTCCCTATAGTGAGTCGATATACTCAGATGCCGAATCANCAGTTGAAGAGTTCTTCG
AAGGAGACTTGTGAGCTGCGATTACCACAGAGCTAAAAACACCCGCTTCTCTTAGCTCTT
GGATTATAACCTGTAAGAGATGATAGCTTGTGGAAAACCAAACACTGATCGGTCATGTCA
AATAAAGAGCGTGGTTTGAGTTTGTGGGACCTACCCTGGGAACATAAATGGCGGGTAGAA
ATCCCCTTCCTAGGAAGTTGAACCTCAATTTTTCATCACGCCCCACACATGCTCTCTGAA
CCTGAATTA
GenBank Accession AL768601 [GenBank]
Graphic View Graphic view of gene At3g57200
Predicted Position of Insertion Chr3:21172232 - go to primer design
BLAST e Value 3e-94
Hit Clone Code (BAC ID) F28O9
Hit Gene Code At3g57200 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glycosyltransferase-like protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL768602 [GenBank] AL768601 [GenBank]

Gene hit At5g57010

 
Sequence (A. th genome BLAST matches underlined) 
>27-011919-strizhov-C4-8409
TTGATCCATGTAGATTGTCCCGGACATGAAGCACTTTACAATTGAATGTATCCTGACACC
ATATAGAATATTCAATAAAAGAATTCTGGTACGTTCGAATTTCAGTTTTATACATTTTAA
CCCAATGTTGATATGAAAATTATACTTAAGTGGTGTGTTTGGTTTAGGTGGAAAGAATTG
GAATTGGCAAAGTTAGAACCGAACAAAACCAATGATAAACCATAGTCTGCTGTATCAAGG
TGGGCAAGAGCTGGAACAAAAGCAGCAAAGGTAATAATTAATTATTCACTATGGGATCCT
CCTATTAGTGATCGGGNAATGCCTGATGTCAAATCAGCATTTGAAGAGTTCTTCGAAGGA
GACTTGTGAGCTGCGATTACCACAGAGCTAAAAACACCCGCTTCTCTTAGCTCTTGGATT
ATAACCTGTAAGAGATGATAGCTTGTGGAAAACCAAACACTGATCGTTCATGTCAAATAA
AGAGCGTGGTTTTGAGTTTGTNGAACTAACCATGGGAGCATAAATGCGGGTTANAATTTC
CCTTTCTAAGGAGTTTCAACTTCAATTTTTCATCAGTCCACACAACATGCTCTCTGGACC
TTGATTTAATGAAGCCTGTTAAATTGCCACAGTTGGAAATTGGGATAAAAAACAGTGATT
TTATTTAAATCTATTTTTATTCCATTGCAACATTT
GenBank Accession AL768602 [GenBank]
Graphic View Graphic view of gene At5g57010
Predicted Position of Insertion Chr5:23068662 - go to primer design
BLAST e Value 9e-110
Hit Clone Code (BAC ID) MHM17
Hit Gene Code At5g57010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calmodulin-binding family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL768601 [GenBank]


Last Updated on 10.06.2021 13:37