SimpleSearch - Line and FST details


Line specific information

 
Line ID 077H06
Vector Used pAC161
Line Availability available as T3 set from NASC (N407386)
Segregation Analysis 50:46:36
Confirmed for Hit At1g19490
Parent of DUPLO pair none
Parent of pair(s) 89890, 89912, 89952, 90007, 90023, 90070, 90081, 90094, 90115, 90134, 90142
Note

Gene hit At2g25090

 
Sequence (A. th genome BLAST matches underlined) 
>48-K016172-022-077-H06-8409
TATCACTGAGATTTCCCGGACTGAAGCCATTCTACATTGATATATCCGGACATGGAGGTT
CTTGAGCCTTGTGAGTTCTTTCCGTCTCTTTCTAGTCAATCTGGCTGGATACTTTGCACC
TATGGGATCCTCCCTATAGTGAGAGGTATCTCCCCATACGACAAATAAATAGCAAAAACA
ACATACGGTTTGGGCCAAAACCTGGTCAAAAAATACTTACCTGCACAATGTCATGACGGT
TTCCTCAATCTACGGAAAGAACCCACCAAGGAGTGCATACAAAACAATCCCGCACGACCA
AATATCACTCCATATCTCCGTCTCATCCTTTATTCCAGAAAACCTCCGGCTCCACATAAG
ACGCTGTCCCCCACCGCGTATGTAAAACATCCTCACTGCTACCACGCCTGCCACCTATGG
GATCCTCCCTTATAGTGAGAAAGTCTTTTAGGAAAAATTGAGATTTTTAATAAACATGTC
ACAAACAAAAAATTTCAAGACGAGTATCGAATTTTGGATGCAAATTCCAATATCTGGTGT
TTCTGACAACCCTATGGGATCCTCCCT
GenBank Accession AL937236 [GenBank]
Graphic View Graphic view of gene At2g25090
Predicted Position of Insertion Chr2:10671749 - go to primer design
BLAST e Value 5e-71
Hit Clone Code (BAC ID) F13D4
Hit Gene Code At2g25090 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation CBL-interacting protein kinase 16
Insertion Classification CDSi
Confirmation Status failed

Gene hit At1g19490

 
Sequence (A. th genome BLAST matches underlined) 
>48-K016171-022-077-H06-8409
TGATCTGTAGATTTCCCGGACTGNAGCCATTTACAATTGATATATCCGGACATGGAGGTT
CTTGAGCCTTGTGAGTTCTTTCCGTCTCTTTCTATGGGATCCTCCCTATAGTGAGAACCC
GAGATGATCTTGTTACCGTCTGATTTGCTATGAAAAACTAACGATTCTGGGAAGATTATT
CAAGAAATTCTTCTCTTTCTTGCCGGAACCAGAGGATCATTCATTCGCTTCTCACGTTCC
GTAGAGACCCGGGGCGTTGATGAGTAGCCAAAGAGGTATTTAAGGAATCGGGCTGATTCT
ATCTCTCTTCCTTCCGCTCGAATAAAGGAAGGATCCAAAAGAATCGATCTTGCTCTTAGT
AGCTGAATCTCTCTTTGATGGATCAATGTGTGATAGTGATATTCCGAATCCTCCTTACTA
ATGGAATCGAGAGGAACTATGAATTGAACAGCAACATCCGGTCGATTGGCTATGGGATCC
TCCCCTACAAGAGGAGAGAGAGCTCGNTTTGTGGATGGGTANGGAGTAGCAACCCGATGA
CTGAACTCCATACTGTAAAAGCAATTTC
GenBank Accession AL937235 [GenBank]
Graphic View Graphic view of gene At1g19490
Predicted Position of Insertion Chr1:6751982 - go to primer design
BLAST e Value 4e-16
Hit Clone Code (BAC ID) F18O14
Hit Gene Code At1g19490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Basic-leucine zipper (bZIP) transcription factor family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37