SimpleSearch - Line and FST details


Line specific information

 
Line ID 078C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N407418)
Segregation Analysis 50:35:32
Confirmed for Hit At3g12230
Parent of DUPLO pair none
Parent of pair(s) 80176, 80193, 80206, 80219, 80233, 80247, 80248, 80249, 80250, 80251, 80252, 80253, 80254, 80255, 80256, 80257, 80258, 80259
Note

Gene hit At3g12230

 
Sequence (A. th genome BLAST matches underlined) 
>11-K016174-022-078-C02-8409
TAAAGTGAGCTAAGCGTGCGTAGCAATCAAGACATTAAAAGCAGCATACCGTACCATATG
AATAACAGCATCAAAGGCTATCGATCTCTATGGGATCCTCCCCTATAGTGAGAGCGNTCG
CTATTGCTATGGGATCCTCCCTATAGTGAGAATCCTGTAACGCAATGACGGCATTTGTAT
GATCCTCCTTCCTTTCCCACAATCGTCACAAAAAAGTGACAGATAGCTGGGCAATGGAAT
CCGACGATGCCCCCCGATATTACGTTTCGTTGAAAAGTTGCAATTGCGATACGGTCTACT
GAGACTGTCTCTTTGATATTAGTGGGGTATACACCCGTGTCGTCGCCCACAATGTCGACT
AAGATTTTCTTCTTGACAATGACCCCAAAAAAACTCTGTATGAACTGATTGCCAGTCCTG
TCCAGGAGCTCTGGTTAATCCTTTACTTGAACCTTAGTACCCATGCGGAATGGGGATCCT
C
GenBank Accession AL937285 [GenBank]
Graphic View Graphic view of gene At3g12230
Predicted Position of Insertion Chr3:3900188 - go to primer design
BLAST e Value 8e-39
Hit Clone Code (BAC ID) F28J15
Hit Gene Code At3g12230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation serine carboxypeptidase-like 14
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g48385

 
Sequence (A. th genome BLAST matches underlined) 
>11-K016176-022-078-C02-8409
TGATATGTAGATTTCCCGGACTGNAGCCATTTACAATTGAATATATCCTGAAATCGTACT
TGATAGATGCAACGCCATCTTCCCCCTCAAAGCACAGCTGGTAATGCATCTCCTGCTGCT
CACGCAAGTGATCCCTGACTTGATAACTTGCAGTTATAGATTACCTTGTTGGTGAAAATG
AAGGGCTATATTAATGCATTTTGCCTATGGGATCCTCCCCTATAGTGAG
GenBank Accession AL937286 [GenBank]
Graphic View Graphic view of gene At5g48385
Predicted Position of Insertion Chr5:19610855 - go to primer design
BLAST e Value 3e-54
Hit Clone Code (BAC ID) K23F3
Hit Gene Code At5g48385 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation FRIGIDA-like protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37