SimpleSearch - Line and FST details
Line specific information
| Line ID | 078F06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407458) |
| Segregation Analysis | 50:8:6 |
| Confirmed for Hit | At3g05550 |
| Parent of DUPLO pair | 12371 |
| Parent of pair(s) | none |
Gene hit At3g05550
| Sequence (A. th genome BLAST matches underlined) | >46-K016174-022-078-F06-8409 TATCCTGTAGATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGGTCTACTAAA TCTAGTTGACTCAGAAATTCTCTCGTGATCTACGCTTTTCTCCTATTGTTGTGGATGGTT GTCTCGCATGCTATGGGATCCTACCCTATAGTGAGAGGGAGTAATAATATAAAATATTGT ATGATTTTCTTCTATATGATTTATTAATTATTTTAATTGGAATTGCATCTCGGCAATGAC ACAACGATGATTCTATGGGATACTCCCTATCGATAGTCCCTATAGTGAGATGTATTGTTT TAATTTGTCCGTCGTTGAATCTCGCTGTTTATGGCTAAGTGGTATTACCGATTCTATCGC CTATAACTGGTCCCAACCTTCCATGTAAACCATTGTCAATATCATCCACGCCACGTGAAA TATCTAATCAAAAGGATTGATTGATTATAAATGGTTGAATGATTTTTTTGTAAAGTTTTT GAGTCTCATTTGCATTTTGAAACATTTTCTGTAGCCATGAACATTTATAGTTGAGCAACA TCATCATCTCCATGTCCCAAAAGCATGTACATTTCTCTGTTCTTGCCTGTAAGCTATAGT TGTTATCGACATAAATTTTATGTTCTTAGCCAAATCATTTGTTCGAGACATCCAGTCACA TGGTACTGTACGAAGCACTTTTCTCACCAAGCTTCTTCTCAGGTTGCACGCTCAGGCGCT GACTTTAACTGCTTTGGCTGAAGCAGCCGTGGTGAAGTACTTTGACCCCAAAACTGAAGC TACCAACCGCTATCCCAAGGTTCTGCCAACGGAAAATTTTTTCCACAAGGACTAAAAAAT CTAAACT |
| GenBank Accession | AL937341 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:1612972 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F22F7 |
| Hit Gene Code | At3g05550 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Hypoxia-responsive family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g60480
| Sequence (A. th genome BLAST matches underlined) | >46-K016176-022-078-F06-8409 TGTCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATGCATAGAGAAACCTA ACCATGGATCATGCATGAAATTCGAAATCTCTTTTCTTGCAGAAACGTAAGGTTTTTATC CTCCCCCCCAAAAAAAAAGAAACGTAAGGTTTTTATATAATTCTTAAGCGTTTTCAGATT TGATTAATCATGACTGAAAACACGCATCTCATTCTTCTTGTCTTTTTAAAAAGTTTCCAA ACTAATGCTAAATAATAGGATTATTTACTAATCCAAATTGCAATCAACAATGTTATTTAT ATAAACCTATTGGACAAAATCTCTCCCTTTATGTCATTGACAACATTTCCAGAAACAGAG TATAAACGCACTATGGGAT |
| GenBank Accession | AL937342 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:24323146 - go to primer design |
| BLAST e Value | 4e-158 |
| Hit Clone Code (BAC ID) | MUF9 |
| Hit Gene Code | At5g60480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | homeobox protein 26 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
