SimpleSearch - Line and FST details
Line specific information
| Line ID | 078F12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N340525) |
| Segregation Analysis | 7:2:1 |
| Confirmed for Hit | At3g06460 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 9540 |
Gene hit At3g06460
| Sequence (A. th genome BLAST matches underlined) | >94-K016176-022-078-F12-8409 TGTCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGTAAAACACCTTT GAAATAAACTGCCATATGCCGGCGCATCCCGAGCCGACTTAGGCTCCGGGAGCATCCCAG CGGCTCCTAACCCCATGCCGAGAGCAAACTGAACCATTTGAAAATTCGTCACCAACTTCT TCCACTTGGGCCTCGATCCGATAGCGCAGAGGAAATAGTACCCGTACATAATCACATGGA CCGTCGAGTTCAACACGAGCCCAACAGGAAACATCGATTGACGTGTTCGTAACCAGAGGT AGCACAAAATCACAACCGTTGCGTGGTGATAGACGTGGAGGAACGAGAGCCGTTGGATTG ATTTGTTGAGTATGATGAGAAGTGTGTCTACGAACTCAAGGATCTTCNAGAGGTAGAAGA CTTGAGCCCAAGAGACAAGCGGACCCCTTACGTTTCACGGTCGAGGGGGAAACAAAACGG CGTCAGACAGACGCTGCCTTCGGGTCCGAGGGAGAAGATTATGGAGAGAGTGC |
| GenBank Accession | AL937353 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:1983417 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F24P17 |
| Hit Gene Code | At3g06460 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GNS1/SUR4 membrane protein family |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g62690
| Sequence (A. th genome BLAST matches underlined) | >94-K016174-022-078-F12-8409 TGATCTGAGATTTCCCGGACTGAAGCCATTTACATTGAATATAGCCCATATTACCATGCT GAGATTCCACCACATTATTTCGATGACCAATCCCGGGATATGCCTGCTGCTGACTTACCA ATAACTATGGGCAGCGAAAGCCATTTAATTATAAGATCCGATTTGGTGTATCGAGATTGG TTATGAAATTCAGATGCTATGGGATCCTCCCCTATAGTGAGAATCNCTAACCGAAGCTCT CCCACCAAAACGATTTTCTTTGTTTTTTTTCCTTCCTCTTCTCTTAAAATTTAATTACAA TAAGTGAATGTAATTTGATCAAGATTTTATCTTACTTCTGTAATTAAAATTAAAATATTA TTCATTATTATTAATTTAACCGAATGTTAGCCTTAAATGCTATGGGATCCTCCCTATAGT GAGAGNANCTATTGAAAACACCGCCTTAAGAATAAATGCTTTTCTTGCTTTTCTTATTAA AACAGTAAAAATGCTTTTCTTGTT |
| GenBank Accession | AL937352 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:23185553 - go to primer design |
| BLAST e Value | 1e-37 |
| Hit Clone Code (BAC ID) | F26K9 |
| Hit Gene Code | At3g62690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | AtL5 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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