SimpleSearch - Line and FST details
Line specific information
| Line ID | 078G08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407472) |
| Segregation Analysis | 50:9:4 |
| Confirmed for Hit | At3g51310 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1337, 2976 |
Gene hit At3g51310
| Sequence (A. th genome BLAST matches underlined) | >63-K016176-022-078-G08-8409 TGTCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGGGATACAAGAAA GTCTCAACTCAGGTTCAGCTCAGTAGGAAAAAATCACAAAGAGTAAAATAGCAGCATGAC CAGACATTGGACTCTCACAGTACGCAAACATATTCAATACATACATGCTGGATATGAGAG CAGTATATCATTAGCATTTCCAACCAACCTGATGTTGCATTCGAACCCATAATTTGTTCA TCTCGGTAAAATTTTGAAGCACGAACTCTAAAGCATTCATGTGTGCATCACCATCTCTGG AGAGAAAAGCAAAACACTTGCCTCTTAACATGTGTTTCATAGCTTAAACAAAATCATCTA ACAGCAGGTCGTGTGGCCTTACCCTTCCAAGTCAGAACCAATGCTGGGTAACTTATCCCT ATGG |
| GenBank Accession | AL937365 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19048207 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F24M12 |
| Hit Gene Code | At3g51310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | VPS35 homolog C |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T12J2
| Sequence (A. th genome BLAST matches underlined) | >63-K016174-022-078-G08-8409 TATCCTGACATTTCCCGGAATGAAGCCATTTACAATTGAATATATCCTGTCCACTTTATA TTATCCATTGTAAATTTATCCGCCTCCATCCAGTCTATTAATTGTTGCCGGGAAGCTATG GGATCCTCCCTATAGTGAGACCCTTTTATAACCCTCACTAACCTGGGTGACCGGGACCCA ATGAACTGCTTAGCATTCCCAATGAACGGGATCCGGCTCCCAAAGCACTGATTTGGGCTC CCAATGAACATGCTATCCACAGGAAAGAGACCTATTCGACCTTGCTCCCCTGCTATGGGA TCAACCATATAAAGAGATGCCTCTTAACATGTGTTTCATAGCTTAAACAAAATCATCTAA CAGCAGGTCGTGTGGCCTTACCCTTCCAAGTCAGAACCAATGCTGGGTAACTTATCCCTA GAAGAAGCTTGGTTAGTGTTGTGGAATCAAATATGACTTTATGTCATGTGTATGATTGAG TATAAAAACTTAAACCGCAACCCGATCTTAAAAGCCTAAGTAGTGTTTCCTTGTTAGAAG ATACAAAGCCAAAGACTCGTACGGACTTTGGCTACTCCATGAAAGCTTGGACAACCTATG GGATCCTCCCCATAGTGAAGAACTCGCAAGGGCGGAACAAAAAACGGAGAAGAGGACCCG GGACGGGAACACCGGCGACGAGAAAGGCGAAGGAGGGA |
| GenBank Accession | AL937364 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:3606515 - go to primer design |
| BLAST e Value | 6e-89 |
| Hit Clone Code (BAC ID) | T12J2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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