SimpleSearch - Line and FST details
Line specific information
| Line ID | 079B12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407512) |
| Segregation Analysis | 50:45:30 |
| Confirmed for Hit | At5g50860 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2962, 3004 |
Gene hit At5g50860
| Sequence (A. th genome BLAST matches underlined) | >90-011917-strizhov-B12-8409 NTTTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGGACT TGAGACCTTGGGTAGCAGCAAGACCTGAAAGATCATGCTCCATATACTCAAAAAAAGGTA GAGACTACAGGAAACCCGTGAAGAACCAAACCTTGAAGCTTAATAACATTAGGATGATTA AGCCGTCGTAACACAAGAATCTCCCTATGGGATCCTCCCTATAGTGAGTNGNNGNAGATT CTGAACATGGAAGACTCTTGGGAGATGATCGCGCGGCGCAACGGGATCGTCTACGTGAGC GCAGTGCTATGAGTTCGTTGCCTGAGCTATGGGGTTAGAGGCTGTTGCTGGGGATGAAGT TGTCCAATCATAGGCTAGTCTAGACACACCATAACTCGTGTCTGGGTATACCAAACCTAA GGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL768801 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:20696220 - go to primer design |
| BLAST e Value | 1e-53 |
| Hit Clone Code (BAC ID) | K7B16 |
| Hit Gene Code | At5g50860 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Other FSTs Supporting this Hit | AL768800 [GenBank] |
Gene hit At5g52070
| Sequence (A. th genome BLAST matches underlined) | >90-011918-strizhov-B12-8409 NTGATCCATGTAGCATTTCCCGGGACATGAAGCCTTTACAATTGAATATTTCCTGGACTT GCCACCTGAGGAGTCCTACTAGACCATAAGAGGATCCTGCTTATTATAGCTCTATAACAA GGGGCAGACTACAGGAAACCCGTGCAGCACACCAGAACCTTGAATCTTAAAACATTGAGA TGATAGGGCCGGCGTAGCACAATATTCTCTCTATGGGATCCTCCCTATAGTGATATGTAG GTAGGTCTGACGACGGAGGAGCCTTGCGAAAAGATCCCTTGTCTCGACGGGGTCGGCTAT GGGATTCTGCCTATAGTGAGCTGGAACTCCAAGTTTGAATTTAATGCCTAATTTTGAAGA TGAATTGTCAGTATAAAAATTTGATCTGATACTCTATTAGTTAGTATGTGAACTCCTTTC TAACAACTCTTCTTATTCATGCGAGAGCTATCACTAAGTATTAGAACAAAGTTTTATACT GACCATAAAATTTTACCTGATTGTCGGAAGAAAGTATATCTAGAAATTTTGTGGTGGGTA AAGTCTTTGAT |
| GenBank Accession | AL768802 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21161204 - go to primer design |
| BLAST e Value | 8e-70 |
| Hit Clone Code (BAC ID) | MSG15 |
| Hit Gene Code | At5g52070 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Agenet domain-containing protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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