SimpleSearch - Line and FST details
Line specific information
| Line ID | 079G10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407570) |
| Segregation Analysis | 100:97:94 |
| Confirmed for Hit | At1g61390 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 666, 8831, 10546, 10555, 10560, 11031, 11406, 94810, 94811, 94812, 94813, 94814, 94815 |
Gene hit At5g48220
| Sequence (A. th genome BLAST matches underlined) | >79-011917-strizhov-G10-8409 TTTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGGCGA GACAGAGAGCGAAGAAGAAGACTCAACCAAAAAAAAAAAGGGAAGCTGCCCTGTTTTTTT TTAAGCCTTTCCTTTCCTCCGCCACTAAACAACGTTTTTTTCCGTTAAACCTCCACAATA CACTAACCAAACCTTTTTTTTATGCTCCTTTTCGGGCTAAAAAGGTTTAATTTTTTCATC CAATCAAATCTTTTGGTTTTTATCTTACCCTCAAAATGGAATACAATATGAAAATTCCAG GGCTGATTCTTTGATTCTAAAAATGGAGGAAAATCTATGATTCGAGAGTGGGTATCAATA GCTTTTCACCTTCAGGAGTTGGAAATCGATGTTAGGAAGGCCCTCACTATGGGA |
| GenBank Accession | AL768920 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:19549890 - go to primer design |
| BLAST e Value | 4e-50 |
| Hit Clone Code (BAC ID) | MIF21 |
| Hit Gene Code | At5g48220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Aldolase-type TIM barrel family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At3g13490
| Sequence (A. th genome BLAST matches underlined) | >79-011918-strizhov-G10-8409 TTTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGTCGA GACTATATATCGTAGAAGACTACTCCTACGCCGATAAAAGGCCTGGAGAACGGATCATAT AAAATGGGGAGATCACAGGCACTTTGATCTACACTCACTCTCTTTTCTTGCCCTATTTTA CAATCGAACTACGTTCCAAATCCGAAGCAAATTAAGCTCTAACGGTTCATCTGGTACACA CTACATAAGGTATGGGATCCTACCTAAAGACACAGAATGGGCTACGATTGTACACTTCTA GCCCCGACTATTTGTGGACGAAAATGGAAGAACTTATCACCTGCGCGAGGAGGTGCCAAC GGATCTTCATCTTCTGGTTTCAGAACCACGACGGAGGAAGGTCCTAAATCCGGGAGCCGA CTAAAAAGGGACTGCGTCATCTTCCAATTCCACCTCTGATCGTGAAGCTATCCGCTCCAT TCGCCTTAGAAAGGTTTGATTCTTACTTTCAAAATGTGAGCTTTACTTAAATTTCCCTTT GGAAATATGTTTGGGTGCTGATCAATGTTTTTGGTTCATAGGTTGAAGAATTGAGAGGCC AAGGTCTTGAACCTTATGCTTATAAGGGGGAAAAAATCCCACAGTGCAAATCAGCTTCAA GAGATATATAAGCATTTAGCTTACGGGGGAAAGATCAGACAATGAAATTGAATGGGGTTC CATAGCTGGGAGAAGTCGTTGCCTCGAAAAGCCCTTGGAAAACTTG |
| GenBank Accession | AL768921 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr3:4399464 - go to primer design |
| BLAST e Value | 1e-127 |
| Hit Clone Code (BAC ID) | MRP15 |
| Hit Gene Code | At3g13490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Lysyl-tRNA synthetase, class II |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At1g61390
| Sequence (A. th genome BLAST matches underlined) | >79-011888-strizhov-G10-8409 GTGATCCATGGTAGATTTCCCNGGACATGAAGCCTTTACAATTGAATATATCCTGTCGAC CTATCTATTTTCGAAAACTAGGCCTTTGCCGCATTATAAGTCCTGGAGATACGGAACAAT ATCAAATGGTGAGACACAGGCACTTTGTTCTACACTCACTCTCTTTCCTTGTCCTCTTTT TTAATCTAACTCGGTACCAAATCCGAAGCAAATTAATCTCTTCCTCTTCATCTGATACAC ACTACATTTCTATGGGATCCTCCCTATAGTGAGTCAGATNTACTCANATAGGNAAATTCC AGGGCGGATTCTTGGATTCTCAAAATGGAGGAAAATCTATGATGCGAGAGGGGGTATCAA TAGCTTTTCAGCTTCAGGAGTTGGAAACCGAGGTTAGGAAGGTCCTCT |
| GenBank Accession | BX572155 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:22652161 - go to primer design |
| BLAST e Value | 2e-76 |
| Hit Clone Code (BAC ID) | T1F9 |
| Hit Gene Code | At1g61390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | S-locus lectin protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
