SimpleSearch - Line and FST details
Line specific information
| Line ID | 079H07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407579) |
| Segregation Analysis | 100:54:43 |
| Confirmed for Hit | At2g40950 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At2g40950
| Sequence (A. th genome BLAST matches underlined) | >56-011917-strizhov-H7-8409 TTGATCCATGGTAGATTTCCCGGACATGAAGCTCTGTACATGAACTCATTCCTCCATAAC CCCTTTCTTCCTTTTGAATCTCTCCTTCTTCTTCTTCATCCCCAAATTCGAAACCCTAAC CCTAAAACTCAGTTTCAAAATGGCTGAACCAATCACCAAGGAGCAGCCTCCTCCACCTGC TCCGGACCCTAATTCCACCTACCCTCCTCCGTCCGATTTTGATTCCATCTCGATCCCTCC GTTAGATGATCATTTCTCCGATCAGACTCCGATTGGTGAACTAATGTCCGATCTGGGGTT TCCCGATGGTGAATTCGAGCTCACTTTCGACGGTATGGACGATCTTTACTTCCCTGCTGA GAATGAGTCGTTTCTCATCCCTATCAATACGTCCAATCAAGAACAGTTTGGTGATTTCAC TCCGGAGTCTGAAAGTTCTGGAATTTCCGGTGATTGTATTGTTCCCAAAGATGCAGATAA GACTATTACAACTTCCGGTTGATTAACCGGGAATTCCTTATGGG |
| GenBank Accession | AL768939 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17090421 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T20B5 |
| Hit Gene Code | At2g40950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Basic-leucine zipper (bZIP) transcription factor family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL768939 [GenBank] |
Gene hit At2g09220
| Sequence (A. th genome BLAST matches underlined) | >56-011918-strizhov-H7-8409 TGCAGAACATGTGGCATGTTGAGGTCATATGGAAACAGGTCACAAGACTCAAATTCTTTA CATTGCGGCGGGTAGACGCTAGCTTTCTATGGGATCCTCCTTATAGTGAAGGAAAGGACT TGCGAAGGATTGTGGGATTGTGCGTCATCCCTTACGACCGAGGAGATCTTGCATCAATCC ACTTGCTTTGAAGACGAGGGAGGAACGCCTTCTTTTTCCACGATGCTCCTTGTGGGTGGG GGGCACTCTGTGTGACCACAGTGAGCAGAAGCTTCTTATACGATGGACTTTCCTTTATCG CAATGATGGCATTGGGAGGAACCACCTTCCTTTTCGCCTATCTTCACAATATAGTGACAG ATATCTGGACGATGGAATACGACGAGGTTTTCGAATATTACCCTTTGGTGAAGAGTCTCA ATTGCCCTTTGGACTGCTGAGACTGCATCTTTGATATTTGGAGGAGTACACAATGCGCGT GGCGCTCCACCGTGTGAGACGAACATTTTCTTCTTGTCCTTGACTCTTAAGAGACTCTGT ATGAACTGTTCGCCAGCCTTTACGGCGAGTTCTATTACGCCTCTCTATGTGAATCTTTGA CTCCATGGGAATTGGGGATACTGTATGGGATACTCCTAGAGGGGAAAACGCCCGGGGCCA CCTCCACCTGGTGGAAGAAAACCTTTTGGTTGGT |
| GenBank Accession | AL768940 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17137232 - go to primer design |
| BLAST e Value | 5e-25 |
| Hit Clone Code (BAC ID) | T3K9 |
| Hit Gene Code | At2g09220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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