SimpleSearch - Line and FST details


Line specific information

 
Line ID 080A02
Vector Used pAC161
Line Availability available as T3 set from NASC (N407586)
Segregation Analysis 100:98:88
Confirmed for Hit F14G24
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit F14G24

 
Sequence (A. th genome BLAST matches underlined) 
>91-K020161-022-080-A02t-8409
CCTTGAGCATAGCTTCTATTACGTGCGACTAAACGAAAATGCGGTACATCTCTTTGCTTC
AATTCATGACATCGCCAATGGGATCCTCCCCTCCCTGAGATGAGA
GenBank Accession FR802343 [GenBank]
Graphic View Graphic view of sequence FR802343 of line 080A02
Predicted Position of Insertion Chr1:19713597 - go to primer design
BLAST e Value 0.004
Hit Clone Code (BAC ID) F14G24
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR802343 [GenBank]

Gene hit At2g46020

 
Sequence (A. th genome BLAST matches underlined) 
>09-K016177-022-080-A02-8409
GCAGCGGTGGCCAAACCAACCCACGTCANTCCAACAACANGCGGTGCGGCCAGGTGATTC
TGTGGGATGGGCAAACTCCGGTGAAGAAGGTTAAGGACAGAATTCTGGTAAAAGACGGCC
NANTGGGAATCCTCCTANTAGTGAGANNCNCCNNCCCNCNNCCCCTCCNNCTCTTTCTTT
TCTCTTTCAAAACTTCAATCGCCCCCTCACCAGATATCAAAATCCCCCCCCACACAAAAT
CTCACGCATTTAATATATATAGAACACNGCCATATATAATCTTGAATATTCGCTACCCCC
AATGCAATCATACCTCACATCCACGATGCGCGGCTCCCCGCTTCCACTCACCTCAACACC
ATTTATAACGCCAAAACACCAATCCAACTATTAGCGCCCGATATCCCTTGAAAACCCGTT
CACCGAGGCATTCTTGCGTTGGCGTCCACTACAAACGGAGACGCAAATCCATATATCTCA
CCAAAGTCCCCAAAATAACA
GenBank Accession CT026085 [GenBank]
Graphic View Graphic view of gene At2g46020
Predicted Position of Insertion Chr2:18931450 - go to primer design
BLAST e Value 3e-26
Hit Clone Code (BAC ID) T3F17
Hit Gene Code At2g46020 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transcription regulatory protein SNF2
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 517G02


Last Updated on 10.06.2021 13:37