SimpleSearch - Line and FST details


Line specific information

 
Line ID 080C04
Vector Used pAC161
Line Availability available as T3 set from NASC (N407612)
Segregation Analysis 50:45:36
Confirmed for Hit At5g42240
Parent of DUPLO pair none
Parent of pair(s) 4519, 8452, 8453, 8472, 10047

Gene hit At5g42240

 
Sequence (A. th genome BLAST matches underlined) 
>27-K016175-022-080-C04-8409
TATCCTGTAGATTTCCCGGACATGAAATTTGCTGATCTATGAATGTTAACCTTATAACAT
CATCACTATTATATATATATATATATATATATATTTTTATTTTTGTTCCTCGGAATATGA
TATCCCCATTTGTGTGTGGAGGATCGCCCTTGCATCTCCACACTGGGAGGGTGTCTTTTC
CCTTACGAGGGGGGTGATTAAAAAAAAAAAACTTTTTTTTTAACACTGAAATGAATCTTT
ATCTCCCTCCACTAAACTCTTTTTTGATATTTTTTCCTGATCAGGGACGAATGCCCCTTG
ATGCATCTTGAAAAGAAAGGCCCCTCCTTCATACCAATGTTTGCAGATGCAGGAGCCACC
TTCCTTTTCCACTAACCCCCCAATACACAGACAGATGGCTCTTCAATGAAATCCCCTGTC
GTTGCCGGACCTCCCCCCCATATGGCGGAGACGTCTCAATTGCCCTATGGTCTTCTGAAA
CAGCCTCTGTGATATATTCGCAGTAGACCAGCGTGCCGCGCTCAACGATGCTGACAAATA
TTTTCATCATGCCATTGANGTCGTAATACACTCTGTATGAACTGATCGCCAGCCTGTACT
GCAAGCTCTGTAAACTCCGCTATAAGAATCCTCCACTCCATGCGAATAGGGGATCCTCTA
TGGATCGCCCCCTTTATTGGGCGCCAGGGGAATTGGGGATCCTCTA
GenBank Accession AL937409 [GenBank]
Graphic View Graphic view of gene At5g42240
Predicted Position of Insertion Chr5:16889529 - go to primer design
BLAST e Value 2e-05
Hit Clone Code (BAC ID) K5J14
Hit Gene Code At5g42240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation serine carboxypeptidase-like 42
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37