SimpleSearch - Line and FST details
Line specific information
| Line ID | 081B08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407700) |
| Segregation Analysis | 50:46:43 |
| Confirmed for Hit | At5g08590 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 92575, 92583, 92589, 92595, 92600, 92604, 92607, 92609, 92611 |
Gene hit At3g02150
| Sequence (A. th genome BLAST matches underlined) | >58-K016180-022-081-B08-8409 GATCCTGTAGATTTCCCGGACATGAAGCCATTCACAATATGAAGTAATCCCATCGAAACA CATTAGCGACGAATGACATATCCAGATGATCATGTACTTTCATAACTAGTAATATCTATG CACTCCCCTCCTGACTATAACAACCAAGTCATGCTTAACAAACTACTCCCTATGAATGTA CATCATGTATACTACATCCTATGGGATCCACCNCTACAATGAGACCCTCCCAATAGGGGG GAATATCTGAATTTTACAGAAATTTTAGATGCCAAAATCAACATACATTGACGTGAAGTT ATATATAATAGCAACTTATTAGAACATCTAACCAATGATATGAAAATAACGACATTGTAG GAACAATTATTGTTGTGAAATGGATGATGTACGATTATTGATGGAAAACGTATGAATTTT ATCTCAATTAGCCAAACCATGATAATTTCGTGATATTTTTTCTTTAATTGACCACTGCAA ACTTATTGGGAGAATTAAAAAGCCAAGACCTATATTATTTATGATCCTTGATTTTTTTTT TTGCCCTTTCCAAAAATAGGTTTTGCACCCCCCAAGGCACCCGGGAAATATGGAAATGAA GTGGGACCTATAAAATTATGACTATGGGATCCCCCCAAAAGGGGAGGAAAGNACAGGAGG GAAACTCGCGGAGAAAAAGAACAACGGCAAACGGGGGAAGCCCGAACCCCCCCAAAAGAA AGAACGCGAAAAAACACCACAAAAAAAAACCCCAGGGGACGGGAAACAGAAAGACAAAGG GGGGGGAAGAAGAAAAGCACGAAAGACCGGGGGAGAGGAAGCAGACAAAG |
| GenBank Accession | AL937495 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:390909 - go to primer design |
| BLAST e Value | 2e-135 |
| Hit Clone Code (BAC ID) | F1C9 |
| Hit Gene Code | At3g02150 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | plastid transcription factor 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At5g08590
| Sequence (A. th genome BLAST matches underlined) | >58-K016179-022-081-B08-8409 GATCCTGTAGATTTCCCGGACATGAAGCCATTTTATTAATTGAAATCAATTGAATACTCA TTGCTAATCAGTATTTATTCAGATTAGCATGTTCTTTAATCAAAAGTATTATCTATTCAC TCCTCTCTTGATTCTTATATCTTTGTCATGTTTTCAATTTGATTTCTATGGTGTAGTCAT CTATACTACATTCTATGGGATCTCCGCCTATAGTGAGANNNNNNNNNNNNNNNNTNNNNN NNTTTTTTTTTTTTNAAAAAGTNTATGTCCCCCTTGNTTTTAAATAATNANNATNTNTNT TTTNTNANTANAATTAAAATAAATAATTTTAATNTATAANNAATTTAATATAATAAAAAT TTAAATTTATAAGAAAAAATTTTTTATATTTANTAAAATNATAATAATAAAATAAATAAA TTTNAAATGAAATTTAAAGATTTTTAAANATATTAAANTTTTGTTTATAAATATAAAAAG GAAATTTGGAAATTTGAGAGTGTATTATTGAAAAAATTAGAAGGAAAAAAGAAAAGGTTT GATGTGAAATGTAGGAAAAAAATTATATAAATTGAAAAGAAGGGAAAAGAAATTGTGTAT GAAAAGGGTAGGGGAGNTATAAGGGAAAAAAAGAGTGGGGAATGTAATTGGGATATAT |
| GenBank Accession | AL937494 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:2784623 - go to primer design |
| BLAST e Value | 4e-59 |
| Hit Clone Code (BAC ID) | MAH20 |
| Hit Gene Code | At5g08590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SNF1-related protein kinase 2.1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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