SimpleSearch - Line and FST details
Line specific information
| Line ID | 082E03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407827) |
| Segregation Analysis | 100:93:87 |
| Confirmed for Hit | At5g64300 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2210, 97587 |
| Note |
Gene hit At1g29890
| Sequence (A. th genome BLAST matches underlined) | >12-K020161-022-082-E03t-8409 ATTTATTTTGGGCATTTGCAGTCGAAACATCGAAGGAGGAGTTGGACGATGGTGTTGCTA AGATATTGATGGCTTTCTCGATTTGGGTACTATGAATTTCTTCATACGCGAGTTCCTATG GCTTCTCGGCTTCTGGTGTGTCTTCTATAGGCGGCGTCCCAATTATTCTGATGTTTGTGT CGCGGTTTCGAGATGCCTCGGCTGGATGCCTGTGGTGTGAATAGATCTATTGGCGTGGAC GGGCTGCGTGGAATGAGTATCATCCCTACACATCTTG |
| GenBank Accession | FR802402 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:10465954 - go to primer design |
| BLAST e Value | 1e-05 |
| Hit Clone Code (BAC ID) | F1N18 |
| Hit Gene Code | At1g29890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | O-acetyltransferase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 041H03 |
| Other FSTs Supporting this Hit | FR802401 [GenBank] |
Gene hit At5g38600
| Sequence (A. th genome BLAST matches underlined) | >21-011867-strizhov-E3-8409 GAAACAAAACCCAACAATTCGGGCTATGGGATTCTCCCTATACAGAGTCATATACCAACG CCATTCTTGCTTCTTCCCTCCTCCATTGACTAAGGTTAAGCCCTATCTCTATGTAAATCT CTCAATCTTCAAATTGCTTGTTTCTTGCTTCTTCTTTCTTCGTACCTTAAGAACATTTCA CTACTTTTGAAAGATTTGTTGTTCCCGACGAAGCCTTGGTGTCGTTTCATCTCCTTCTTC AAATTTTTAAAAATTTCTCCAGTTTTTGCTTCGCGAGTATATGCTTTAGGTTTCGAATTG AGTAAATTAAGCTCTTGTTCACTGTTTTTGATTTGTCAAATCTTGAACCCTATGGGATCC TCCCTATAGTGAGTCGTATTACTC |
| GenBank Accession | AL769002 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:15456483 - go to primer design |
| BLAST e Value | 7e-163 |
| Hit Clone Code (BAC ID) | MBB18 |
| Hit Gene Code | At5g38600 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At5g64300
| Sequence (A. th genome BLAST matches underlined) | >21-011866-strizhov-E3-35St ATGACGTAAGGGATGACGCCACAATCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTCACAATAAACTATTAGGTATGAAGCCATTGTTGGGAGAGTCCCTCTATTGAGTC TTATCACGAAGGAGAATAAGAGATATCTGGAGACAAAGCGGACCAAGATGGGTCACATGT ATGGCTTGAAGTTCAAAGGGGATGTTGTGGAGAAGATTGAGTCTGAATCTGAGTCCTAAG CTTAAAAACCAGGACGAACCGAATGGAATCAAGAACTATAGATATAATACTTCACAAAAA ACAAGGAAAGAAATTGACACAGAAGAAGAGGAAAAAGACATTTGATCTGTCTGAGAAACT TGATTAGATTGGTTTATGTTCTAATCTAATCTGATTTGATTTTTTTTTATTTTGTCTACG ATTCTTGAGTTACGAAATGTTCATCATTTGTTACTTCTTGTTGTCGGGATTGAGTAGTTG CATTTTTTTAGTTGTGGAGCTGTGACAAAGAGGCCAGCTATGGGATCCTCCCTATAGGAG T |
| GenBank Accession | BX001090 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:25720640 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MSJ1 |
| Hit Gene Code | At5g64300 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GTP cyclohydrolase II |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX001090 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
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