SimpleSearch - Line and FST details
Line specific information
| Line ID | 085A11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408075) |
| Segregation Analysis | 50:20:8 |
| Confirmed for Hit | At4g14230 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3244, 9601 |
| Note |
Gene hit At4g14230
| Sequence (A. th genome BLAST matches underlined) | >81-011845-strizhov-A11-8409 TTGATCCATGTAGCATTTCCCGGACAGTGAAGCCTTTACAATTGAATATATCCTATATAC TTGGATAAGATATTCAATGAGTATGTTGCTATTATTCTATCCGTCACTTTCGTTCTATTC GTTGGAGAGGTATGCTTTGATCTTCTACCTTTAAAGTCTTGCTATGGGATCCTCCCTATA GTGAGTCGTATTACTCAANCACAGCAAAATTCACACAAAGTCAAATGATCAGATACAGAT TCATATCAATTCAAGCAATTCCTTATAATCAATTGATCGGTGACGAATTACGAAAGAGAA GGATCAATTTACCAAATTGTTTCTTCTCTTTTGGAGTACCACTCCGTTGGAGAATCTCGA GCTCAACGAGACCGAAAGACATAAGCCCTAAAGTGAGACCAGACATAATTCCGGCGAAGA GAACAAGGAAACAAGAGATTCCGGCGTAAGTGATCCACTCAAGCGATCCAAACGGAATCG CCTCGCTTTGTAAGGCGTTAGATTGACTGATTCCGGCTAACATCCTCGCCGCAACCACCG CATTAATCGGATGCATCTTCGTCGTCTCTATATCTATCTGTTGGCAATTTTCCGACACCT TTCTTAGATATTTTCTCGCCTAATTTTGGGGGTTTTTATATCCCTCTCATCGACCTAATG GGGGCCGGGGGTTCTGCACAATTTTGAAATCCTTAACATATACCGCAAA |
| GenBank Accession | AL769245 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:8202633 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g14230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CBS domain protein with a domain protein (DUF21) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g48660
| Sequence (A. th genome BLAST matches underlined) | >81-011847-strizhov-A11-35St ATGACGTAAGGGATGACGCCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTGAAGAGAAAAAGGATCTGAAGAAAACTCTTAGAACTTT TGTACAGTGTCTGACGCTCATTGGAACGAAGACTCACGTTAGGGGATTCTGGTCATGATA TTATTAAACATGATCTTCACCTAGTTACCCTCGGGAGTGCTTGGCATTCCGTGCGATTAT GACTTCTGTGGACCCACCCAAACGTCTGAATGCCTGACGACGGAGCAGTGTTCCAAAAAG ATCCCTTGGCTAGCCTGGGCCCGCTAAACTCATTATTTTATGTATGGGACACCTTGTACC TAGAGAACACCTCCTCTTTGAAGTCCCATTGTGAAGGAGCTTCCTCCATGAAGTTGCAGA ACTAATGCGCAGTATGGCAAACTACATGGAGTGTATTGGACATCACTATGGGATTGTGAC TTGACCGAACGTTATGAATTTGGGAATCTGAATATGCCTTAACTTAAACTCAAAATTCGC TCTGTGTGACTCTCGGCTTGGTTTAAATCTGGTTAGGGGGTACCTTCGAATTTGATGGTG GGCACTAAGGGATCCTTCCTTTAGCTGAGGTGGCTTCC |
| GenBank Accession | FR802474 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:18029955 - go to primer design |
| BLAST e Value | 3e-23 |
| Hit Clone Code (BAC ID) | T8P19 |
| Hit Gene Code | At3g48660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein, putative (DUF 3339) |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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