SimpleSearch - Line and FST details


Line specific information

 
Line ID 085D04
Vector Used pAC161
Line Availability available as T3 set from NASC (N408104)
Segregation Analysis 100:69:49
Confirmed for Hit At3g19940
Parent of DUPLO pair none
Parent of pair(s) 6094, 6121, 6175, 6176, 6209, 6239, 8822, 10541, 11033, 77121, 77147, 77155, 77157

Gene hit At3g19940

 
Sequence (A. th genome BLAST matches underlined) 
>28-011846-strizhov-D4-35St
CTGACGTAAGGGATGACNGCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAG
GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT
TCGGTTTAAACTATCAGTGTTTCCCGTCAATGTTCCGGTTCCTGACGTTCCGAATCTTGC
ACCGATGAAAGAACCAACAAGAAGCTGAAAATAAATAAAGAACATCGGATCATTAAGTCT
TTTTGGTGATTACGCATATATGGAATTGGTTTTGTTTCATTTGACTATGGTCATGATTGT
TATTTTGCGGTTCCTTGCCAACCAAGTCATTTTGTTTTACCTGACAAATGAACATTTGAA
TGCCACCTTCGAGGAAAAGCAACCTTCTACCATATCTATCAACCGCGTAAATTGAGACAA
AGGTTGAAAGCATGTTGACAACACCGGTTATAACAGCAGACATAAGAGCAGCATCATCAC
CAAAACCAAGAGTCTTGAAGAGAACAGGAGCGTAGAACATAATGACATTGATTCCAGTGA
TCTGTTGGAAAAAGGGAATGGCCGAGCAGAAGATTAAAGCTGGTCTATATTTACTCTCCA
TGATGTTCCTCCATGGATTTTCCACCTTTTTGCCAGCTTCAACAGCATCAATGAGATCTT
TGAACTCATGATCAACATTGTCAGCTCCACGTATCTTCTTCAACATTTGGTTTTGCCTCC
TCATTTTTGCCTCTCTTGAGCATCGAGTTTGGGGGTTCGGGCCAAAATAAATGGACCCAT
CACCATAACAACAGGCTGGAACAAGCTGCTAAAACTTAAGAAACCCTCC
GenBank Accession BX546524 [GenBank]
Graphic View Graphic view of gene At3g19940
Predicted Position of Insertion Chr3:6939579 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MPN9
Hit Gene Code At3g19940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Major facilitator superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR802506 [GenBank] AL769292 [GenBank]


Last Updated on 10.06.2021 13:37