SimpleSearch - Line and FST details
Line specific information
| Line ID | 085E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408117) |
| Segregation Analysis | 50:17:10 |
| Confirmed for Hit | At3g60960 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2885, 3224, 67800, 96788 |
Gene hit At5g07830
| Sequence (A. th genome BLAST matches underlined) | >37-011848-strizhov-E5-35St CTGACGTAAGGGATGACGCCACAATCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTGATGATCCATCATACTCATTGCTGATCCATGTAGATTT CCCGGACATGAAGCCATTCTCTAAAGGATGCTTGCACATGAAACGATGGGACGAGCTCAA CAGTTTCCTAACCGCAACCGGGTAAGCTAATTCACTTTCGGTTTAGTTTCATTAACGTTC ACATTTTCCTCTTTTGAAGAATCTTGAGTTAGTTGTGTTTGCTTGTTTTTATCGAGCAGA GCGGTAGTGACATTCGGTTTAAACGCTTTGCGTGGGAGACACAAACTCCGCGGAAAGGCG TGGGGTGGTGCATGGGATCACATAAACACTCAAGATTTCTTAAACTACACAGTCTCGAAG GGTTACGTTATTGATTCTTGGGAATTCGGTAACAACAAACATTTAAAAAGTCGCCTTCTT TTACTCGGTCTTTTTTCTTAGCTTTCCTTGTTCTCGGTATAGGAAACGAGCTGAGTGGAA GCGGAGTTGGTGCGAGCGTGAGCGCAAAGCTTTACGGGAAAGACTTGATTGTACTTAAAG AATGTATCAACAAGTTTATAAAATTCTTTGGTACACAAGCCTATACTTGGCGCTCCTGGA GGGGTCTATGAACAACAATGGTACACCAAACTTCTTGAAATTTCCGTCCTATGGATCTCT TTTAAAGGGGAGAANNNAAAAAAANAAAAAAAAAAANNTTTATTATTAAAATAATAA |
| GenBank Accession | AL769332 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:2504739 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MXM12 |
| Hit Gene Code | At5g07830 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | glucuronidase 2 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR802512 [GenBank] |
Gene hit At3g60960
| Sequence (A. th genome BLAST matches underlined) | >37-011845-strizhov-E5-8409 TTGATCCTGTAGATTTCCCGGACTGAAGCCTTTACATTGAATATAACCGGTCCGCGTAAA AATGCGGATGCTCAAAGCAAGAAAGCTTGCTTCATCTCGCCCCATATGTTGGATGGGAGA TTTTTTGTACCTGGCACTTCCCAGGCTCGCCTAAACGAAGATGTTTGTTCTCTTCTCGTT GTGCTAACCCACACCATGGTACAAGATGCGCTCTGCAATAGCCGGTCTTATGTCCACGCT CCCACACGGGAGATGACGAACATCTATCCAGGGACCCCCACGTCGGTGAATTTTTACCGA ACTTGGCCACAACCTGCAAATCCCTGTTTCCGACAATGGGGTGCACCACTACAGCATCTT CCTGATTTGCGAGAATCTCCGTAGCTACCTCATCTTTGCCTTGCTTGAACCAATAGTTCA TAAACGAAACATTAAAGATTGCCTTTGCCTTGTGATATTCGCTCCCTGGAAGTTTACTAT CCAGCCCTTTCAATTCCTCGAAGATTTGGCTATGGGATCCTCCCTATAGGAGTCAATTTA AACAAAANNNCGNNAGACTGGTCCGCAGTCTTTAACGAGAGGTCTGTGAAGTCCCCTATT TGAAATTTGACCCCCTGGGAAAGGGGATCCCTATGGGACCTCCCTAGGGGGAGGGGACAC GAAAAGGACACCGGGGTGGAAGAGGGAGGGGTGGGCAGGGGATGGGGCCCGCAAAAAAGG GGGGAGCGCGGAGAGACCGAGCGTTGTAAATTTTGAATATTTT |
| GenBank Accession | AL769331 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:22536811 - go to primer design |
| BLAST e Value | 1e-81 |
| Hit Clone Code (BAC ID) | T27I15 |
| Hit Gene Code | At3g60960 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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