SimpleSearch - Line and FST details
Line specific information
| Line ID | 085G08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408144) |
| Segregation Analysis | 100:65:59 |
| Confirmed for Hit | At1g05160 |
| Parent of DUPLO pair | 2497 |
| Parent of pair(s) | none |
Gene hit F23H11
| Sequence (A. th genome BLAST matches underlined) | >63-011845-strizhov-G8-8409 TTGATCCATGATAGATTTCCCGGACATGAAGCCATTTACATGTGAATATATACTGGGCAT AGAAATAACTTATAGAACTCACAGCGTCTCCTTACTACATCTTGGGCTGGCCCACTATGG GCCTACAACAGCGCGCATCTGTTTGAATCTGAGCATTCTTCTTCTTCAGCTCGGATATAA AGAGCATACTCATGGGAACCTCTCCCTCATAGAGAGAGGCTGTATACACACATTTCTAAA AACAAAAAAGCTTTCAGAATTCAAATGTGTAGATTTTTTTATAGTATAGAAAAAAGAAAC AAATCACTTTAATATTTTTTTGTTTGAAAAGCCTCGTTTATGAGGTTTAAAAAAAGAAAA AAAAAAAAGGAAAAAAAGGGGTTTTGGAAAAATTAAAAAAAAGCCCAATGGGAAAAAACA AAGGGGGAAACCTTAAAAGGGTTTTAAAG |
| GenBank Accession | AL769379 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:22000509 - go to primer design |
| BLAST e Value | 2e-36 |
| Hit Clone Code (BAC ID) | F23H11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit F6F9
| Sequence (A. th genome BLAST matches underlined) | >63-011847-strizhov-G8-35St CTGACGTAAGGGATGACGCCACAATCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGAAATGATCTCTAAAAGA AACCCGGAAAATGGAATTCTTATCGCAGGTTAGATTCTGGTCACCTATGAGTATAGCGCA ACAGAGATTTTGTATGCGATTTGTTTTTGGTGATTTTGAAAGAGGTGTTTCTTCACTATG GGATCCTCCCTATAGTNGAAGCANCNCGAACANAGNCATAACCACTACTCATCGCAATAT TGACACTGCCTATTCTTTTGTACAATTTGTGCCACGTGTCCTATCCATAGTACTGCCAGG TAGGCGACATGTGTAATTGTTTTGTTTTGTAGCATTACGACAAAAGTTACAAAGGAAAAG CTGTGGACCTCTCTGCGAAATTGATAGTGAATGATTTTATTCTAACGTTGTGATTGAGTC ACATATAGCCACTGCCTCATATGCTCTTAGAATATACATATTTTTGCAATTTGTTAATGC AAATACTAAATACAGACGATGACGCATACAAACGAAGCCGTAGTCAGCAACTAAAAGCCA AAAGTGGAAAATGGTAGAAAGGTCTATCTGTGAACTCAAAGAATGCGTGTGAAGATGAAC AAACCTTTCCCGACCTTTACCAAATTGATTAATCTCAAGACCCACCTAAGGATGGGTTTT TTAATTTTTTTAATTAAAAGAAGCCTCACTTAATGCTTCCCTCTTAAGGCAAAATTATAA ATCCGCAAACCTAGTTACTGGTTTTATTCCCCTCCCCCCCAGAAATTGGCACTTTCCCCC ACTCAAAAATTTCAAAACTGGATATAAATCCTTTTTAATTC |
| GenBank Accession | AL769381 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:6899536 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F6F9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g05160
| Sequence (A. th genome BLAST matches underlined) | >63-011849-strizhov-G8-35St TTGACGTAAGGGATGACGCCACAATCCCCTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGAAATGATCTCTAAAAGC AAACCCGGAAAACTGGAATTCTTATCGCAGGTTAGATTCTGGTCACCTATGAGTATAGCG CAACAGAGATTTTGTATGCGATTTGTTTTTGGTGATTTTGAAAGAGGTGTTTCTTCGCTA TGGGATCCTCCCTATAGTCGACAGGGTTCCCCTCGGGAGTGCTTGACTTTACGAGCGATC ATGACTTCTGTTCGACCACCCACACATTCGAAAGCGCTGTCCACGGATCAAATTTCCAAA CAGATCCCTTGGCTCGATTGGCTCTGCTA |
| GenBank Accession | AL769383 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1488429 - go to primer design |
| BLAST e Value | 1e-56 |
| Hit Clone Code (BAC ID) | YUP8H12 |
| Hit Gene Code | At1g05160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 88, subfamily A, polypeptide 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL769380 [GenBank] AL769383 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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