SimpleSearch - Line and FST details
Line specific information
| Line ID | 086B01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408173) |
| Segregation Analysis | 50:50:13 |
| Confirmed for Hit | F20D10 At4g39150 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3949, 4010, 4243, 7221 |
Gene hit F20D10
| Sequence (A. th genome BLAST matches underlined) | >13-K011905-0022-086-B01-8409 TGATCCATGTAGATTTCCCGGACATGAGTTCTATTCATGTGGTTTTGGACTTTGTGAAAA TAATAAAATTAGCAGCAAAACCTAACAAGTGTGTTTATTACATGAACAAAACCTCTGTTC GTATGGGATCCTCCCTAGTGGTGAGTCGGTACTTACTCAATCCTCAAAGAGCTCGCTACC AAAGAGCATACCAAACACAGCTGCAGGATCAACCATTGCATCCCTGCAAGAAAATGGAAG TGAAATTAACATACTATAGCAATTATACCAATCACATTCTCAAATGACATATAAACATCA CAGAAGTTATCTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNCNNNNNNNNNNNNNNCTNTNNNNAGNN NNNCNNNNNNNNNNNGNNNGCNNCNGNNNNCNCNNCCTCNCCCCCCCCCGCCCGCCCCNN NNCCCNCCCCCCCCCCCCCCCCCCCCNCCNNNCCCCCCCCGCCCGGGCGCCCCCCCGCGG TCGCGGGGGGGGAGGGCGGGCACCTCCGCGCCCAGNNGNAAAGGACCGGCCACACTTTTT CTACTCCAAAATGGGGGAGGCCCCACCGCTTTTATAAAAAGGAAGACACATTTGGTATAA CCACAAATTCAATTGGGGGTGTTATAAGGGCAAAAAACGAAAAAATTTTCCTATTCTGGC TTCTTTTTTTTCCACCGGCTCACTTCACCCCAAAGGGGGGGCTAGCATTTAAGAAACACC GTCGGAGCCTTGAACTCCCCTTCCAAANNAGGGNGAACAGCCCCCAAGCGGGCGTACTTA AAACTTTGTGACCCCCCACCACGCAACAGCATCCCTCGGTCAACACACCATGAGGGTTTC CAATAGCGTAAATGGCTCTTGGTCGCAAATTTATTCTCGAACACACAGCGGCCCGCCCCC ACCGGGAGAAACAACGAAGGACAACACCTTCTTTTCAT |
| GenBank Accession | FR802558 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17879897 - go to primer design |
| BLAST e Value | 1e-19 |
| Hit Clone Code (BAC ID) | F20D10 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
Gene hit At4g39150
| Sequence (A. th genome BLAST matches underlined) | >13-K011905-0022-086-B01-8409 TGATCCATGTAGATTTCCCGGACATGAGTTCTATTCATGTGGTTTTGGACTTTGTGAAAA TAATAAAATTAGCAGCAAAACCTAACAAGTGTGTTTATTACATGAACAAAACCTCTGTTC GTATGGGATCCTCCCTAGTGGTGAGTCGGTACTTACTCAATCCTCAAAGAGCTCGCTACC AAAGAGCATACCAAACACAGCTGCAGGATCAACCATTGCATCCCTGCAAGAAAATGGAAG TGAAATTAACATACTATAGCAATTATACCAATCACATTCTCAAATGACATATAAACATCA CAGAAGTTATCTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNCNNNNNNNNNNNNNNCTNTNNNNAGNN NNNCNNNNNNNNNNNGNNNGCNNCNGNNNNCNCNNCCTCNCCCCCCCCCGCCCGCCCCNN NNCCCNCCCCCCCCCCCCCCCCCCCCNCCNNNCCCCCCCCGCCCGGGCGCCCCCCCGCGG TCGCGGGGGGGGAGGGCGGGCACCTCCGCGCCCAGNNGNAAAGGACCGGCCACACTTTTT CTACTCCAAAATGGGGGAGGCCCCACCGCTTTTATAAAAAGGAAGACACATTTGGTATAA CCACAAATTCAATTGGGGGTGTTATAAGGGCAAAAAACGAAAAAATTTTCCTATTCTGGC TTCTTTTTTTTCCACCGGCTCACTTCACCCCAAAGGGGGGGCTAGCATTTAAGAAACACC GTCGGAGCCTTGAACTCCCCTTCCAAANNAGGGNGAACAGCCCCCAAGCGGGCGTACTTA AAACTTTGTGACCCCCCACCACGCAACAGCATCCCTCGGTCAACACACCATGAGGGTTTC CAATAGCGTAAATGGCTCTTGGTCGCAAATTTATTCTCGAACACACAGCGGCCCGCCCCC ACCGGGAGAAACAACGAAGGACAACACCTTCTTTTCAT |
| GenBank Accession | FR802558 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:18234802 - go to primer design |
| BLAST e Value | 2e-83 |
| Hit Clone Code (BAC ID) | T22F8 |
| Hit Gene Code | At4g39150 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNAJ heat shock N-terminal domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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