SimpleSearch - Line and FST details
Line specific information
| Line ID | 086E06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408214) |
| Segregation Analysis | 100:63:55 |
| Confirmed for Hit | At3g45470 At1g21890 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5609, 5610, 5627, 5663, 5666, 5711, 7637, 81492 |
Gene hit At3g45470
| Sequence (A. th genome BLAST matches underlined) | >05-K020161-022-086-E06t-8409 CATTTACATTGCAGGCACATATAATACATATTTAACTCAATTAAGACATAACTAGAGACA AAACGTTTATGTTTTATTGTAATGTCGTTGTGGCCTTTGTAGATGTGGGTATCAATTTTG CTACAAATGTGGAGTTGAATGGAAGAAGGGTCAAGTGACTTGTCCTACTGGTTGTCCACG TACTGGCCAAGGTTATTTTTATGATGGTGAATGAAGATGATTGGGATGATTTGTATGCTC ATGGTGGACTGGTCGTATATGCTGAATATCCATAGTTGTTATGAAACACTCTTTTCTCAA TTCTTTGTATCTTATGAGGCCTATGGGATCCTCCCTATAGTGAGATTTTTTTTATCCTCC CTATTTT |
| GenBank Accession | BX530774 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16680710 - go to primer design |
| BLAST e Value | 3e-173 |
| Hit Clone Code (BAC ID) | F9K21 |
| Hit Gene Code | At3g45470 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | IBR domain containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX530773 [GenBank] |
Gene hit At1g21890
| Sequence (A. th genome BLAST matches underlined) | >45-K012541-022-086-E06-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTCAAGTGTCGACACTTGACACATTGGCGCCATTTTTGATCGTTT GCTATGGGATCCTCCCTATAGTGAGTCGATATACTCAGCTCCGTGGAGGTCACTGCGAGC AGTGCACCTGCCTAAACCTCATCTGCTATGACTTAATTTTATAATCGTATATTACTCATA AACTTCTGTAACTTAACCTTATCTGCTCTAACTATTGGACCCTATTACTTAATTTTATCT GCTAAAATTTTCAGTGTGATTGGAACGCTATTTATAATCGTGGGCCTATACACTGTTGTA TGGGGTAAAGGCAAAGACAAAAGAATGACGGATGATGACGAAGATTGCAAAGGACTTCCG ATTAAAAGTCCGGTTAAACCGGTAGATACCGGTAAAGGCTTAGCCGCAGAACTGGAGATG AAATCAAAGGAAGGTCAAGAGGCAAAGGCTACTACTACTACTCAAGTTGAGATTTGAGGA TGCTTATGTACTGTTGACGGAGGAAGACACAAANCTGGCTTTCTTTCTCTGGATATTAAG CTTATGTTTTTTGGCTTTCCAAGTTACAGAAAGATTTTGGCACATCAGATGTAATATGAA GAGATGACTCAATCATCTTGTAGTTTTACTATGGGATCCTCCCTATATGAGCGNTTTACC CTAANNNTNNNNTNCTNNNNNGNNGNNGTGNTTTCTCCCCTCTCTACCCACTATANNNNT CGGGCCGCACCCCGCGGAGCCACACTCCCACCTCCCAAATAAAACCTTCGTTTCTTC |
| GenBank Accession | AL769466 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:7683249 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T26F17 |
| Hit Gene Code | At1g21890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nodulin MtN21 /EamA-like transporter family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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