SimpleSearch - Line and FST details
Line specific information
| Line ID | 086G05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408237) |
| Segregation Analysis | 50:39:36 |
| Confirmed for Hit | At2g29380 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 68191, 96970, 96971 |
Gene hit At2g29380
| Sequence (A. th genome BLAST matches underlined) | >77-K011905-0022-086-G05-8409 GTGATCCATGGTAGATTTCCCGGACATGAACGCACTTGTACAATTGACATATACCGCTGC CCTCGTAAACGAACTGTAACGTGTACATGCACGATGCGCATCAGCTGACATGACCGATCA GCTCCGTGGGATCCGGATAGATTAACATACACGATGATTCCGATAAGGAGGCCGTAAGTG AATGCCCTCTAGCATCCTGCGTATGAATACATCCCTATACTGAGTAATATAACTCATGGC TCAAGCATTGAGCTATGGAGCGGAATCATCCTATGGGATCCTCCCTATAGTGAGGCGCAT TACTCACGAACACGAATAACAAAACTCTTTCTTATATGTTTCAAGAAATGTTTTCTTTTT AGACGAACTCTTTCAAGAACTGGTGATCCCTGCTTTGGATGCTACACTGGCAAATAAAAA CGCTCGAAAACCCATCAATTTGACAAATAATGTCATTTCACGGTTACTCGGCATTCTCTA TTTTACACACAAAACCTGTCCTCTTGAGAAACAATTTTAAATTCCTTTCTATAAAATAAA GGAATCCCTCGCAACGGCGTTAGTCTCTGGCCGCGACAATTCTGGGGCCAAACCAATTTG ACACCGCCCCGGGGGGACGGATTTTAAGCAATTTTTCTTTTCCGCGCCACGAAGCCTTTT CACCCGAAAGGGAGGGCTTGGCGCCTCTGTATTGAAAAAACCAAGGGCGAACCTTTCCTT TGGTGGGGGGGGAAAAAATAAACCCCCCGGCTACTTCACAACACACCATCAACACCACCG ACGTAAAGTGAACGATGCGCACACTTTTTTGTATATGT |
| GenBank Accession | FR802625 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:12609044 - go to primer design |
| BLAST e Value | 8e-61 |
| Hit Clone Code (BAC ID) | F16P2 |
| Hit Gene Code | At2g29380 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | highly ABA-induced PP2C protein 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g44890
| Sequence (A. th genome BLAST matches underlined) | >39-K012541-022-086-G05-35St TTACTGACGAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGACGTTTCCCCGCC TTCGGTTATAACTACTTATACTTTGTGAATAAGCGACTCACGTGGTCCTAAGCCAATAGA TGAGGCTCAGGCATTGGGTGGGAATAAGGGATCCTCCCTTGCTGGACTGGATTGCCGCCT GTGAGCCCATCCCTGGAGAACATTGGTATACGTAGCTATGGTGAAAGATTATACTGAATG GAGACAGGATATCAGCTTCTCAGTCTCTCCGATGACTCCTTCTTCATAGAGAGCCTATGC CTATCGGATACTCCTTGTTTGCGTCGTTTTACGTCATACCTATAGCAGGCTTGTAAGATA TCTGTATCTTATGAGAGCCTCTGTCTAACCATGCCTTGATCCCATATCATACATAGACGG GGATAAGCTACTGCGGCCCTACACGCTCCACCCTTCTGACCTCGACAGTTACACCACCTC ATCTGAGAAGTCTGTTCCTGCTGATAAACATGTATCCGCTGAGGCTGTCTTCTTATCAGA GTAGGGGGGCCGGAGACTGATACCACTGAGGATGAGTCAGCT |
| GenBank Accession | FR802626 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:18129272 - go to primer design |
| BLAST e Value | 7e-12 |
| Hit Clone Code (BAC ID) | K21C13 |
| Hit Gene Code | At5g44890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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