SimpleSearch - Line and FST details


Line specific information

 
Line ID 086H01
Vector Used pAC161
Line Availability available as T3 set from NASC (N408245)
Segregation Analysis 50:23:14
Confirmed for Hit At3g05020
Parent of DUPLO pair none
Parent of pair(s) 7012, 92253, 92256

Gene hit F12G12

 
Sequence (A. th genome BLAST matches underlined) 
>08-K012541-022-086-H01-35St
TTACTGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATA
AGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGC
CTTCGGTTTAAACTATCAGTGTATGGATGGGCATGCTTCCTTGAAAGCATGGATCACACT
ATGGGATCCTACCTATGATGAGACATTGTACTAAAAAGAAAGAGTAATTACCACTTTTTT
TTCAATTCAAAAATGTACATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGATAA
AACGACAAATTACGATCCGCCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATT
CGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTAATGAGAAAAC
TTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTCAGATTGGTC
TGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGAGCTACCAATT
CAGTGTAGCCCATTACCTTACATAATTCACTCAAATG
GenBank Accession FR802634 [GenBank]
Graphic View Graphic view of sequence FR802634 of line 086H01
Predicted Position of Insertion Chr1:12377108 - go to primer design
BLAST e Value 4e-04
Hit Clone Code (BAC ID) F12G12
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g05020

 
Sequence (A. th genome BLAST matches underlined) 
>85-K011905-0022-086-H01-8409
NTTGATCCATGTAGATCTTCCCGGACATGAANGCCTGTACATAGGAATAGATGTGAGCAC
ATCCACCTTGACCTTTTTTTTATACAAACCGGCCTTACACATAGCAGATGGTGAGACCGA
AACATCTTGAGCTGCGGGTTGCTACTTCTTGCAAATCGATAGACATACCTTGGAATTGTT
CTTAAAAGCGACGAGTGGGATCATCCGTTACTCGAAATCTTTGCCTCCCGTCTCGTTCCA
GTTCCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACNNCCTNGTNTCAGCAGCNC
TTTCTCTATCGACTATGGATGCGCCTATATACCAAGTATAATGTCTTTTAAAACTTTGAG
CCCTATATATATACATTAACAAACTTGAAAAACAGTGCTCATACCCCGCCAAACACAGAG
AGGCGGCGAGATGTGATCGAACGGCGGAGGTTTAAAGATACATTAGTCTTTCCGTGGCTG
GAAATCAAAGCTTGCTTCTCGAAACCAACCCTTGGTGCTGGCTATTTG
GenBank Accession FR802633 [GenBank]
Graphic View Graphic view of gene At3g05020
Predicted Position of Insertion Chr3:1391923 - go to primer design
BLAST e Value 2e-55
Hit Clone Code (BAC ID) T9J14
Hit Gene Code At3g05020 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation acyl carrier protein 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37