SimpleSearch - Line and FST details
Line specific information
| Line ID | 087C02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408282) |
| Segregation Analysis | 50:50:41 |
| Confirmed for Hit | At4g26650 |
| Parent of DUPLO pair | 12847 |
| Parent of pair(s) | none |
| Note |
Gene hit At3g04770
| Sequence (A. th genome BLAST matches underlined) | >11-K012542-022-087-C02-35St TATCTGACGAAGGGATGACGTTTTNTCCACTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTGGACCATTTGAATAAACTTGGGTATGTAGATGATAAGA ACAAATCAAACAAAAAAGGGTTGAGTAACGTAATTTAGATGTATACGTGAACTCTGCACT ATGGGATCCTTCCTATATGAGAGATCAGATTACTCACCGTCGTCGCGTCTTTTGAAGACA TAACGCTCCATCTGATAGTTGCAGTTTTTGGTACCAAGGTGAACATCGGCTGATAACATC ATCTGGATATCAGGTTCTTTCTCTGATACCTGACGTCCCGCCGTCGCTACTCCGTTCGCC GCCATCTTCGTTTTTTCGCTCTGTTTCTTTCTTTGATCTCCATCTTTATGAACCCATTTA AGGTAATTTGATAGAGATAAGAGAAACCTATATGTATATACAAGCCATATTCATATTTAT TTCCCTATAACTATATATACATCCACTTGCAATGTGCTCTCTTTTCTTTTGGACTTTTTC TTTTTTTCTTGCAATTACGAAAAAAAGAATAGCTTAACTGCATGTAATTTACCTTCTCTA TGGGATTCTCCCTATAGTGAGTCGATTACT |
| GenBank Accession | AL769541 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:1310577 - go to primer design |
| BLAST e Value | 1e-90 |
| Hit Clone Code (BAC ID) | F7O18 |
| Hit Gene Code | At3g04770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 40s ribosomal protein SA B |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 790G01 |
Gene hit At4g26650
| Sequence (A. th genome BLAST matches underlined) | >11-K012260-022-087-C02-8409 TGATCCATGTAGATTTCCCGGACATGTAAGCCTGGACACCTGACGACTATTTCCCTCTGC GGCATTTTTGAGTGTTCTACCGGAAAGATCCTTCTGAAGAGATTCTGTATTAGAGGTCGT ATTGGTCTCGCTGCTCGTATATCGAGCCACGGATTGCTCTATAAGGTCGGTCTTTCTGTA TTCATGCTCTGTTAAAGAACTGGGGGGTGTCATGCATTAATGAGTTTTACTCAGCTCATT GGATATCTTGCTGAAATCACTGCTCTTTTCGAAATCTTCCGCAGACATTAGCTTCAGCAT GTGCTGTGACTGTTATACACTTGTGACGAATGAGTTGATGCTTTGTGTTGAATTGGCACA TGGAGGGTTTAATCAACGAAAAAAGAATGAATGATCTTCTTTTATTTGTGTGTCCATGAC GAGGCGAACAAAGCTGTCCCGCGGGATGATCAGCAAGTGCTAAAACGACACGCCAGTCCA ATGCACCTTATCTCACCTATGGGATCCTCCCTATAGTGAGTCGATTTACTC |
| GenBank Accession | AL769539 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:13446021 - go to primer design |
| BLAST e Value | 1e-71 |
| Hit Clone Code (BAC ID) | T15N24 |
| Hit Gene Code | At4g26650 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL769540 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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