SimpleSearch - Line and FST details


Line specific information

 
Line ID 087H01
Vector Used pAC161
Line Availability available as T3 set from NASC (N408341)
Segregation Analysis 50:41:37
Confirmed for Hit At4g20240
Parent of DUPLO pair none
Parent of pair(s) 71116, 71277, 71359, 71643, 71675, 72013, 72020, 72021

Gene hit At4g06534

 
Sequence (A. th genome BLAST matches underlined) 
>08-K012260-022-087-H01-8409
GAAAATCGGCTGTCCTTTGAGTATGTATATATGAGGCAATGAAAAATGGACACCCACTAA
GGAATATAAACGGCGTAGGCACTAACCAACTCTTGACGTCATCTGTGGGAACCACCCTAT
AGTGAGGCGCAATACTAATAGAGGGCGCCCCCCGATAGCAACCCATTAAAAGCCGCTAAT
TAACCTGGTAATAGAGTCTCGCCCGCGCCGAAGGAACCTCTTTTCGCTATGGGATCCTAC
CTATAGTGAGTGGTACTACTAGAAAACCCTTGCTATCAGAGGGCTAGATGCCAATGACCA
AACACGGACGAGAGATTTTGTTGCTATGTTGAACCAAAACATACGATATCCAACTTATTT
AAAATCATATCACGTCAAGAACTGCACCCTGAATTCGCTGGACTTATGCAATCGACAAGG
GGGCGCTTGGGAAACCTTGATAATGAGAGTTAACTCACTTCAGTCCACCCTCAACCCGTC
AGGATGTAACCTTTTGAATCATTAGCAACATATCAA
GenBank Accession CR770118 [GenBank]
Graphic View Graphic view of gene At4g06534
Predicted Position of Insertion Chr4:3357910 - go to primer design
BLAST e Value 5e-16
Hit Clone Code (BAC ID) F19O5
Hit Gene Code At4g06534 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit CR770118 [GenBank]

Gene hit At4g20240

 
Sequence (A. th genome BLAST matches underlined) 
>08-K012440-022-087-H01-8409
TTTGATCCATGTAGATTTCCCGTACATGAANGCCTTTACAATTGAATATTGGCTGTCCTT
TGAGAATTATATTTTTGGAATGAAAAATGGAGACCCACTAAGGAATATAAACGTCGAGGA
CTAACTCGGCCTTCGCACGTTATCTATGGGATCCTCCCTATAGTGAGGCGTCTTACTCAA
AGATGGCACCGCCCGATTGGAACCCAATAGAAGCCGGGAATTTTCCTGGTAGTCGTGTCT
CGCCCGCGCCGAAGGAACCACCAGTCGCTATGGGATCCTCCCTATAGTGAGTCGATATAC
TCACAGAACCCTTGCGATTTGGGGGCTGGATGCCATTGAACATAGACGGGCGAGACATTT
TGGGCCAAATTTGGATTCCAACGTACGGGTTCCAATTTCTTTCCATTCGGGGCAGGTAAA
GAACTTGGCCCTGGAATCGCAGTTTCTTTGGTTT
GenBank Accession CR770119 [GenBank]
Graphic View Graphic view of gene At4g20240
Predicted Position of Insertion Chr4:10932158 - go to primer design
BLAST e Value 1e-19
Hit Clone Code (BAC ID) F1C12
Hit Gene Code At4g20240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cytochrome P450, family 71, subfamily A, polypeptide 27
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37