SimpleSearch - Line and FST details
Line specific information
Line ID | 088D06 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N408394) |
Segregation Analysis | 100:99:73 |
Confirmed for Hit | F28O9 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Note |
Gene hit F28O9
Sequence (A. th genome BLAST matches underlined) | >44-K016185-022-088-D06-8409 TGTCCTGAAATTTCCCGGACTGAAGCCATTTAAATTGAATATCAAATACCTCCATAATGT AATCAACGTGACACGATGACATCCCTTCTCAGCTATGTTTGTACACAACTTTCTCGAATC TGATAATTAAAACAAGAGTTTCATGGTTTTCGTTTTATTGGTAATAACCGTTTCAAAATT TATCAAAAGCCTATGGGATCTCCCCTATAGTGAG |
GenBank Accession | AL937670 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:21168530 - go to primer design |
BLAST e Value | 6e-77 |
Hit Clone Code (BAC ID) | F28O9 |
Insertion Classification | Genome Hit |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At2g35530
Sequence (A. th genome BLAST matches underlined) | >44-K016184-022-088-D06-8409 GATCCTGAAATTTCCCGGACTGAAGCCATTTAAATTGAATATAAAATACCTCCATAATGT AATCAACGTGACACGATGACATCCCTTCTCAGCTATGTTTGTACACAACTTTCTCGAATC TGATAATTAAAACAAGAGTTTCATGGTTTTCGTTTTATTGGTAATAACCGTTTCAAAATT TATCAAAAGTCTATGGGATCTCCCCTATAGTGAGAGAANNGCNAGCANATCANATTCCNT CTTATTTACTGTAAAAACTCCTCACGCCCATAGAAAGACGGAAATAACATTAAGACTTTT CGAGCCCAAAGATCCAACAAAAACGTTTGATGAGGCGACATATGGAACGCAAAGGTTATG TGTTCCAGTGTGCAGATTCCAAGTGTTAGCAACACTCATAAAATTTAAATGAGAAATTCC AAGGGACTGACAGATCTGAATAGGTCAATCCAAATTCAGATTCATGCTA |
GenBank Accession | AL937669 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:14924082 - go to primer design |
BLAST e Value | 9e-119 |
Hit Clone Code (BAC ID) | T32F12 |
Hit Gene Code | At2g35530 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | basic region/leucine zipper transcription factor 16 |
Insertion Classification | CDSi |
Confirmation Status | failed |
Last Updated on 10.06.2021 13:37 |