SimpleSearch - Line and FST details


Line specific information

 
Line ID 088E02
Vector Used pAC161
Line Availability available as T3 set from NASC (N408402)
Segregation Analysis 50:33:20
Confirmed for Hit At1g48860
Parent of DUPLO pair 12536
Parent of pair(s) none

Gene hit At1g20230

 
Sequence (A. th genome BLAST matches underlined) 
>13-K016185-022-088-E02-8409
TGATCTGANATTTCCGGACATGAGCCATTTACATTGAATATATCCTGTTCTTTTTCTCAA
GAACCTCGGCAAATTTCACATCTCCCTATGGGATCCTCCCTATAGTGAGATGTACTTGTT
TGTATCAATGAGTCCCATAATCGCAGTTAGATAGGGAATGCGTTTGTCATTAGAAGCTAC
TGTCACCTTCTGCTGCTCATCCTCCTCGACAAAGAACAAGGATGGTGTAAATTTATAGAA
GTCTCGGACGCGACTGGACCAAGATTTGGTTGACCCTATAACTTCCCAACTTTTAACTTC
CATGTCGTACACATGAACCACACCGTTTAATGAATCTTTCATCTCCCTCACCACTATGGG
ATCCTCCCTATAGTGAG
GenBank Accession AL937681 [GenBank]
Graphic View Graphic view of gene At1g20230
Predicted Position of Insertion Chr1:7012060 - go to primer design
BLAST e Value 2e-135
Hit Clone Code (BAC ID) F14O10
Hit Gene Code At1g20230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pentatricopeptide repeat (PPR) superfamily protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At1g48860

 
Sequence (A. th genome BLAST matches underlined) 
>13-K016184-022-088-E02-8409
GGACATGAGCCTTTACATTGATATATCCTGGACAGAGACAGTGTGACTGTGACAGGGCCG
TCTATGGGATCCTCCCTATAGTGAGACTTGCGGGCTATTGATGTCAACATGAGCAAAATG
CCTGATGTAGCAATGACTCTTGCCGTCGTTGCTCTCTTTGCCGATGGTCCAACCACCATT
AAAGATGGTAAGTAAAAAGCTCTCTCTTATAATATAAGGTTTCTCAAGATTCATGGTCAC
TTAATTCTATTTGGGCAATATAGTGGCTATGGGATCCTCCCCTATATGGAGGACACATGA
AGCACACCGTGTAATGAATCTATCATCTCCCTCAGCGCTATGAGATTGCCTTAAGACTGA
AGCTCGATACAAGGCTGAAGCTTTCATCGCTTACCTCCAATTCTTCTGATAAAGGAAGGA
GTAGATCCATTACTCAACGCAGAGATGAGGACACTAACTCTCGGAAGACTACGGTTTCGA
CAATGAAGAAGAAGAAGGACTACCCCAGTAAGGCTAAACATAATAACCATGTGAAGGAAA
TCCATCGAAAAATGAAGGAAGCTTCAAAGAGATGCCCAGGGTCTACTTC
GenBank Accession AL937680 [GenBank]
Graphic View Graphic view of gene At1g48860
Predicted Position of Insertion Chr1:18069468 - go to primer design
BLAST e Value 2e-92
Hit Clone Code (BAC ID) T24P22
Hit Gene Code At1g48860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37