SimpleSearch - Line and FST details


Line specific information

 
Line ID 088E06
Vector Used pAC161
Line Availability available as T3 set from NASC (N408406)
Segregation Analysis 50:48:40
Confirmed for Hit At1g48490
Parent of DUPLO pair 12633
Parent of pair(s) none
Note

Gene hit F28O9

 
Sequence (A. th genome BLAST matches underlined) 
>45-K016185-022-088-E06-8409
TATCCTGAAATTTCCCGGACATGAAGCCTTTACAATTGTCAGTGTCATGGCCCTTAGAAC
TGGCACTCTCAACTATAAAACCTTACATCGTACGATGTGCTATGTGATGGGATCCTCCCT
ATAGTAAGAATAGAACCCTACTTCATGGATGTCGTTTTATTGGTAATAACCGGTTCATAA
TTTATCAAATAGACTAGCTAATCGTCCACCCCTTGCAAGTGAGATTTCTATATTATGTAT
GGCCGAGCCTAAGGGCATATCGGTGGAAGAATATTCTTCTTTTTGATCAATCAAAACCCC
TTCTCAAAATGAACAAGCTTCTTCTAAAGCCTACGGGTTTCTGGATGTAGATGATGATAT
CTATACGGATGGATCTTATATATATCGAAGAATTCTACTATATATGGTAGAAGTACCTCA
CGAATGTATATCTAGGAATCGAAGTCTGCCGAATAACT
GenBank Accession AL937688 [GenBank]
Graphic View Graphic view of sequence AL937688 of line 088E06
Predicted Position of Insertion Chr3:21168517 - go to primer design
BLAST e Value 6e-09
Hit Clone Code (BAC ID) F28O9
Insertion Classification Genome Hit
Confirmation Status failed

Gene hit At1g48490

 
Sequence (A. th genome BLAST matches underlined) 
>45-K016184-022-088-E06-8409
TATCCTGAAATTTCCCGGACATGAAGCCATTTACAATTGTCAATTCCTGATCCTTGAGAA
CTGCTATTTTCTACTAACATATTCATACCATGACCATGCATACTATCGATGCTATCCTCC
CTATAGTATCGAATGGGATCCCCCCTACAGTGAGACTTTGATCTAGGTCTTCTTGTGTTG
CGTTTTAGCTTCTCTTTGACAATATTCTCAGGCGTATATACAATCGTCCTCCTGATCCTG
TCCACCTCGATACATGGAGCCCGTGATTTGATAGATCGGTAAGTGATTTTTCTGTCCAGT
CATATGTGTAGTTAAAATAGTTCTTTATGAATTTGTCAGCAGCTCTATCGTAAACATCAA
TAAGCAACCCTTTTCAAGATCAGCTTATAACACAATTGAGAAGAAGACACAAGTATTAAT
TTCTGTAACCTCGTGTCATGTGCTTAATCCAGGTTATTAACGGAAGATCCCCATCAGAGA
CTTGGAGCTATGGGATCCTCCTTAATAGTGAG
GenBank Accession AL937687 [GenBank]
Graphic View Graphic view of gene At1g48490
Predicted Position of Insertion Chr1:17923889 - go to primer design
BLAST e Value 2e-129
Hit Clone Code (BAC ID) T1N15
Hit Gene Code At1g48490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37