SimpleSearch - Line and FST details


Line specific information

 
Line ID 090C01
Vector Used pAC161
Line Availability available as T3 set from NASC (N408569)
Segregation Analysis 50:50:50
Confirmed for Hit At5g54200
Parent of DUPLO pair 2495
Parent of pair(s) none

Gene hit At5g54200

 
Sequence (A. th genome BLAST matches underlined) 
>03-011957-strizhov-C1-8409
NTGATCCATGTAGAATTTCCCGGACATTGAAGCCTTTACAATTGAATATATCCTGAACAT
AAAGTTATTCCTAACTCCCGAGTTCTAAGAATGGAGAAGAGAGTTTTAAGCTTACTATTG
TTTACCTTTAAACTTGTGAACAAGGTCAACACCATCAACAACACGCGTACGTGAATCTGC
AGATGTGACGAGAACTTCCGATGAACTTCCTGCCACAAACTGTGAAAGTTTCACGAGAAT
AGTCAGATAAACCAGTACAGCATCCAAAACAAAATTGTAGTATAAATGAAAAGATGAGAA
CAGAACGGTGTAAGTTGTTTTAGCTTTACCTGAAAACCAGTGATTTTCTTGTGATGGGTT
TTCTTTTTCCTGTTCTTCAGATTGATTTCGCGTCTCTGCTGCAGTTTGTTATCTGAATAA
ACAAAAAAGATAATAAGTTCAAAAGACGAGATGGAGAAACAACTCAAGTTTCAGATGAGT
AAGTTCTCAGCTTATGTACCATGTGTGTTGTATAAGCAGCATGTTCCTTTGTATGAACCA
ACCAATGCACCCTTTACAAACCAAGAGAGCTTTATTAAGGTACTGCGTGATTTAGTTTTA
CCCCAAGTCACTTTAATGTAAGAAAAACTTTTAATGGCATACCTGTCCATCCGGTGTGTA
GCAAGCAGCTGTGAACATCTCATGAAGATCATTCCATCCACCAACTGGATGATCAGGAAT
ACTCCATATCCGAACTTTTGCATCCCATGGATCGCTGATGAAGTATTTTGCTCCACGGGA
TTTAACTGGATGCAGGTCACTGTATCAAGGAAACAGAAAAC
GenBank Accession AL769637 [GenBank]
Graphic View Graphic view of gene At5g54200
Predicted Position of Insertion Chr5:21994302 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K18G13
Hit Gene Code At5g54200 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37