SimpleSearch - Line and FST details


Line specific information

 
Line ID 091A04
Vector Used pAC161
Line Availability available as T3 set from NASC (N408644)
Segregation Analysis 100:100:42
Confirmed for Hit At5g54870
Parent of DUPLO pair none
Parent of pair(s) 2132, 97586
Note

Gene hit At5g17490

 
Sequence (A. th genome BLAST matches underlined) 
>25-011956-strizhov-A4-8409
NTGATCCATGTNGATTTCCCGGACATGAAGCCATTTACANTTGAATGTTTGCTAGTGGTG
CCTCCGTAGTATAACATGGACTAGCTTCTTGCTGTTTTGGGTACAAGGTTCGATCTTCAG
ACATGGCAGATGTTGCACAGAAGCTTGAACAGCTTGAAATGGTCTTGTCCAATGATATTG
CCTCTTCTATGGGATCCTCCCTATAGTGAGTCGATTTACTCACGNNTCGCGATTGACCCC
ATACTCCATTTCCCTGATCACGACGCACACTGAAATTGATCTATGACTTCCATTTCGAAA
TTACTGCATTGAGATTACTAATGCTGTATAGGCTTATTGAGCCATGCGAAATACAGATCG
CCGCTCTGCTTATATCGGATCCTCCCTGTAGAGAGCCGAATTACACAGTCATAGTCTATT
AAACTATTTTTAAATACCCACTAAATGGTGAATTTAGAGTTTCTATGGAATCCTCCCTAT
AGTGAGTCG
GenBank Accession CT026101 [GenBank]
Graphic View Graphic view of gene At5g17490
Predicted Position of Insertion Chr5:5765808 - go to primer design
BLAST e Value 8e-52
Hit Clone Code (BAC ID) K3M16
Hit Gene Code At5g17490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RGA-like protein 3
Insertion Classification CDSi
Confirmation Status failed

Gene hit At5g54870

 
Sequence (A. th genome BLAST matches underlined) 
>37-K020160-022-091-A04t-8409
CATCACCATCTGAACTCTCCTCGGAACAACTCACGTATCCGCAAATACATAAAGAATCCC
ATACATGGTCCAACTATGTTGGCCTTATCCNGCCTTCATAAACAACATAATCAAACTTAG
AATACAAAAAAAAAAAAAAAATCCCAAATTTTTGGGAAAAATTAAAAAACTTTTTTTTTT
AAAAAATTCCCCTTGGGGGTCCCCC
GenBank Accession BX530777 [GenBank]
Graphic View Graphic view of gene At5g54870
Predicted Position of Insertion Chr5:22289849 - go to primer design
BLAST e Value 5e-16
Hit Clone Code (BAC ID) MBG8
Hit Gene Code At5g54870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation inositol-1,4,5-trisphosphate 5-phosphatase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX530777 [GenBank]


Last Updated on 10.06.2021 13:37