SimpleSearch - Line and FST details


Line specific information

 
Line ID 092A07
Vector Used pAC161
Line Availability available as T3 set from NASC (N408743)
Segregation Analysis 50:47:44
Confirmed for Hit At5g58480
Parent of DUPLO pair none
Parent of pair(s) 5222

Gene hit At1g62300

 
Sequence (A. th genome BLAST matches underlined) 
>49-011955-strizhov-A7-8409
TGATCCATGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATTACTCCCAGATTT
TTTTTAAAAAGTCTCCGGAAAAAAACTCAAAGTTCATTAGACTTAACAAGAAAAAAATAA
TCGGTCCACGTCCCAGACCCTTTTTATGAGAGAGCCTTATGTTCTGGCAGAAGACTGGAC
AGACTCTTTCTTATTCTCTCTCTCTTTCCACCACCCCCTAAACAAAACAAAACCACCTGC
GGGAACCCCTTTGTCTGTTTCCCGTGAACAACGCTGGGGACCCTTTTCTTTGGCGATCTA
GGGACAAAGGCGGGCCGGGCCCAACTCTGAAACCGGCTGGCGGGGGCTTTTGAACCCCGA
CCACTTTTGCGCATAGAACTCCCGCCTGGCTGGAAATCCTTGGGGAATCTGGAGGGCGGC
CCCCTGGGTCTCGCGGATCAACTGCAGCACTGGGGCCAGATGGAAAGCCCTCCCGTGTCG
TAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAGTAGACAGATCGCTG
AGATACGGGCCTCACTGATTAAGCATGGGTAACTGTCACACCAAGAATACTCATGGATAC
TTCAGATTGAGTTAAACCTTCACTCTTTAATTTAAAAGGATCTATGGGATCCTCCCTATA
GGGAGTCG
GenBank Accession FR802766 [GenBank]
Graphic View Graphic view of gene At1g62300
Predicted Position of Insertion Chr1:23019399 - go to primer design
BLAST e Value 8e-30
Hit Clone Code (BAC ID) F19K23
Hit Gene Code At1g62300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation WRKY family transcription factor
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At5g58480

 
Sequence (A. th genome BLAST matches underlined) 
>43-K028184-022-092-A07t-8409
ACGTATAAAGAATACACTCGATTAAAACTCTGTTTCCACCGTTGAAGTAACGAGTGACAT
TGTCATGTATGGGATCCTCCCTATAGTGAGTCCTATTACTCACTCTTATTTACAATTCCC
TCTTCTGATATTCCTCCTTACCCCCCATTCTNNNAAANATTCCCTCCGGGGGGTGTTCCC
TATNNNNNNNCCNNTNNNNNNANNCNTTTGNNNANACCNTNTNNANTANNNNNNNNANNN
NNNANNNNNNNNNNNNNNNNNNNNAAAAANNNNNNNTNNNNNNAANNNNNNAAAAANNNN
NNNNNNNNNNTANNNNAANNNANNNANNNTAAAANNANANAAAANANNNNAANNTANNNN
NNNNNNNANNAAANNAAAAANNNNNAAANTANNGGGGGAGATATNATATAANNNAANAAA
TNANAAATATNATGANNTANNTNAAATAAAAANAAGAATTAGAAGAAAATGA
GenBank Accession FR802767 [GenBank]
Graphic View Graphic view of gene At5g58480
Predicted Position of Insertion Chr5:23642435 - go to primer design
BLAST e Value 5e-18
Hit Clone Code (BAC ID) MQJ2
Hit Gene Code At5g58480 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation O-Glycosyl hydrolases family 17 protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37