SimpleSearch - Line and FST details


Line specific information

 
Line ID 092G09
Vector Used pAC161
Line Availability available as T3 set from NASC (N408817)
Segregation Analysis 50:40:29
Confirmed for Hit At5g06860
Parent of DUPLO pair none
Parent of pair(s) 9597, 89638

Gene hit At2g47860

 
Sequence (A. th genome BLAST matches underlined) 
>71-011955-strizhov-G9-8409
TGATCCATGTAGATTNTCCCGGACATGTGGTCCTTTACAATCGCATCTCTCCTAGTACAC
TCAATATTGAGTCAGCATACGAGACGCCTATGCAAGACGAGCTTTACACACTTGGGAATG
TATTATGCAACTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTC
GenBank Accession AL769806 [GenBank]
Graphic View Graphic view of gene At2g47860
Predicted Position of Insertion Chr2:19602263 - go to primer design
BLAST e Value 5e-13
Hit Clone Code (BAC ID) F17A22
Hit Gene Code At2g47860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Phototropic-responsive NPH3 family protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At5g06860

 
Sequence (A. th genome BLAST matches underlined) 
>71-012001-strizhov-G9-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTCGCCAGGATATCATCCTGAGATAGATAACACTGTTAACTAGAC
ACCTTGTCTCCTCTTAGACCATGGGAGTCCTCCCTATAACCGAGCCGCATTACTCCATCA
CCTTGGAGCTTGTTGCGGGATAAATCGATCCGGTTAAAGTCGATGTTGCCTAATGATTTG
GGTATTGGACCGGAGAGCTGGTTATGTGATAGGCGAAGGTCAGGGACTGTTCCTGGAAAC
GACCCAAATGACTCTGGTATGGAACCTACAACATAAAGATCGTTGTTTAGACAAGACACT
GAATGATGTAATAAAGGAAAAGATCGTTCTTTACCTGTAAGTTTGTTCCTGCTAAGTTCA
AGAGCCAAGATTTTAGGTAACGTAGAGAGAGAACTTGGAATGGAACCAGAGAGATCATTG
AAGGAAANGTCTAAGAACTCGAGATTCTTGAGCTGACTTATAAAGTCAGGAATTGGACCT
GTCAGATTCGTCCAGCTGAGCCTGAGCATTCCGAGGGTCTTGAGTTTTGCGATGGTGGGG
TTGGATTGTACGGTTGAGTTAGAGAGTTTGCCGAAAACAAGGGCCTAAGATCCGGCAAGC
ACCGGCTTCAGCCGGGGTCTTGACCGGAGACTGGGCCGGAAAATGGGTTAGGGCGTAACA
CCGGGGGGTACAGGGGGCGTCCCGCCCTCTCAGGGGGACCAGGGGCACCAGCGGGTTTGG
GGGCCCCCTAAACCGGGAGAAAAGGGGGGTTTAAAAACTTCTTGTTTTTGGAG
GenBank Accession AL769807 [GenBank]
Graphic View Graphic view of gene At5g06860
Predicted Position of Insertion Chr5:2133212 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MOJ9
Hit Gene Code At5g06860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation polygalacturonase inhibiting protein 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37