SimpleSearch - Line and FST details


Line specific information

 
Line ID 094C05
Vector Used pAC161
Line Availability available as T3 set from NASC (N408957)
Segregation Analysis 50:28:20
Confirmed for Hit At3g61390
Parent of DUPLO pair 2723
Parent of pair(s) none

Gene hit At5g29030

 
Sequence (A. th genome BLAST matches underlined) 
>35-012060-strizhov-C5-35St
ATGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGA
AGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTC
GGTTTAAACTATCAGTGTTTGACAGGATATATTGGCGGCTAAACCTAAGAGAAAAGAGCG
TGTATTATAATATTCGGATATTTAAAAGGGCGCGAAAAGGTTTATCCGTTCGTCCTATGC
TGCTTCCTATTCTAGAGAGTATAATTACTTTCCTACCAAGCTCTTACAATCGCCCTACTG
GGATCTTCCCTAAACTGTTCTCTAATACTATCTTGGGAATCATGACTATCGCGGTGGATG
CCAGATATGCGCTCGGGAGTCCCCTCAAGGAAAATCCAGAATTGTCTCCCGGATTGACCG
GTTACTGGGAGCTTCTTCATGCGG
GenBank Accession FR802827 [GenBank]
Graphic View Graphic view of gene At5g29030
Predicted Position of Insertion Chr5:11068433 - go to primer design
BLAST e Value 7e-09
Hit Clone Code (BAC ID) F3F24
Hit Gene Code At5g29030 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g61390

 
Sequence (A. th genome BLAST matches underlined) 
>35-012026-strizhov-C5-8409
NTGATCCCTGTNGACTTTCCCGGACATGAAGCACTGTAGAAGTATCAAACTTTTCTAACT
CTTATCTATAACAAAAACAATTGTAGGCTAAACAATGGGAAAATGTGTATTTTGAGGAGT
TGAAGCAGAGGAAAGAAACAGAGAAGGCACTGAGGAAAAGAAATGACGAACTTGAAAAGA
TGAGATCAGAATCCGAGACCCAAATAACCGAATCTTATACTGTGATTAGAAAGCTTCAAG
AAAAGAACAACTTATCAATGGAAACGTTTAGAGGAATCAGAGAAGAACAAGAAGAGTTGA
AGATAAAGCTTAGAGAAGTATCAAAGCTGAAGGGTAAGCGCGAGGAAGAGGAAGCTTCTA
CCTCTAACCACCGTGAACCGCCACAATACTTTATTTGTCCCATTACACACGTGAGGAAAC
GTTACAAGATCAATGAAAACTAAATGATCAAAATGTTATAATTNTAAGAAAAGAAAAAAA
AGACCAACAGTTTTGTTATTTGTAGGATATAATGGGAGGATCCCATGTANNCAGCTGATG
GATTTACATATGAAGGAGAAACCCTAAGCCCGTGGTTTGAGAAAAGACATGATACTTCTT
CAATGGATAACAAAAGGGTTCCT
GenBank Accession AL769895 [GenBank]
Graphic View Graphic view of gene At3g61390
Predicted Position of Insertion Chr3:22717583 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T20K12
Hit Gene Code At3g61390 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37