SimpleSearch - Line and FST details
Line specific information
| Line ID | 094D07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408971) |
| Segregation Analysis | 50:18:18 |
| Confirmed for Hit | At5g51820 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 243, 3035 |
Gene hit At5g51820
| Sequence (A. th genome BLAST matches underlined) | >52-012026-strizhov-D7-8409 TGATCCATGTAGATTTCCCGGACATGAATCCTTTACAACTGAATATGGTGTCGTCTCTGG ACACATTTTCAGATCTCTGAGATAAGGTGGCAGAGATCCCTGATATTGCTCTTTCTCAAC TTGGAGTGACCAACTGTGGGAATTTCACAGCAGAAGTTGTATATCCTGTTCCCGACTATA TGGAGCTCATGGAGGTAATAATTTTCTCACACGATTCTTCTGCCCTTGTCTTATGATATT GCGCATGACATACATTAGATATGTTCATGGTATTCTATGCAAGATGTTTCCTACTTTGAT CTCATCAGAGGACTTCTTTCACGATCAGATTTTGGGTATGTTCTTACATCTATAGCCACC TACGCATTGGGATTCTACCTATTGAGAGGCGTTGTAGTTACTCTGTATGAGCGCCTTCTG TCTGCGTGCATAAGCGCTCCGCATGCTAAAAACCCAAGCTATCACTATAATTCAATAGAT AATGTATGGTGGCCATTTCCCTTTGCCCTTAGGCTCATGTTTGATGCCATGCCCTGCCGG GACTAGGGGCTTAATCCGAAACACATTTTTGGACACAACTCTTGGTACCCAAACCAGGAC TGGGTGGGGCCTTGTGGATCTTTATTACAAATAAACTCTGGAACCCTTTTTGGGAATCCT CCCCTTACCGAAGTCCGCACCACCTCAACCTCTACCACCACACACCCACGTCCTGTTTGT GTACAACGCGACACGCCCCACCCGCTAAACGCCCCTCCCGCGTCCACCCGCCCAGCCCCC CAACGCGGATTCTAACTCCCGCCGCCGCAAGTTCGCTCGTGCCTAATGGTTACTTCCTAC GTCCTTAACCGACCCTCTCTCCCCCGTCGACTCTCCTCCCGCGCAACCAGAGCGCCCACA CCCTCACCGCTCATTTACGGGCGGCACCGTGTAACGCACCAACAACAATAACAGACAACA AA |
| GenBank Accession | AL769905 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21066378 - go to primer design |
| BLAST e Value | 1e-99 |
| Hit Clone Code (BAC ID) | MIO24 |
| Hit Gene Code | At5g51820 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | phosphoglucomutase |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g51840
| Sequence (A. th genome BLAST matches underlined) | >52-012060-strizhov-D7-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCATCTCTACTAACAATTAGCAACAAAATAAAAGCACACGAATTTTCAAA TCTCTGGTACATCTTGCTTACACAGAGAAGGTAAACTTGAATCTTCATGTATTATCAGAA CAAGTGTTGGTGTGATGCTCTTTTACCTGAACGCGTATTTGATGATTTTGTATGGATCAG ATAATCGAGGAAGAGCAAGTTCAGCTGAGGAAGTAAGTAATGTATCTAAATCTGGGATTA TATTTGATCGCTTTGTTCAATTTTTAAAGGAATGTAGTGTACATTTTACGATCTTAGCTT CTCTCCAGCTATCGGAATCATAATACTCAGATATGGTATTACTCACTATACGAATGCTTT TTACTTCCTGTTTCTTACACGTGGATAAATTATATGGAGGAAACACTTAAAGGTACTGAA GAACTGGTCCTTAATTATAACCGAATCATTTGGAACGCTGATGCTCTAAAAATGGGAATG |
| GenBank Accession | AL769906 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21072175 - go to primer design |
| BLAST e Value | 2e-175 |
| Hit Clone Code (BAC ID) | MIO24 |
| Hit Gene Code | At5g51840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | junctophilin-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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