SimpleSearch - Line and FST details
Line specific information
| Line ID | 094H05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409017) |
| Segregation Analysis | 100:85:77 |
| Confirmed for Hit | At1g54370 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g54370
| Sequence (A. th genome BLAST matches underlined) | >40-012026-strizhov-H5-8409 TTGATCCATGTACTATTTCCCGGACATGACTGCCCTTGACATACCCGAAATATGTCCGGA CGCGCGCTGACACTTTTCACTCTCGACTGGGCCCAGATTGCCGAAAACTACTCTTTTCTC GCAACCTTAAATGTATATTATTAATTGGGAAGCATCGTGTGAATCCCACCTTTTGAAGGG TACTTAAAAACTAACGCAACGAAGTCGTTGTAGATTACAATACCAGCGACTACTACAACT ACAGAGCCGTCGAGACCACCGCCTTCTGCGAGCATGTGTCTTACATCAATACCAGAATAC CTATCCGCTGAATAAGTGTTGTCATAAATACAAGTAGACAGGACGAGAGTCGCTTTGTCT ACTTACAAAGAATACGGGAAAAGTACAATGGGACAACACTCCAAGTTATGAAGATTGAGG AAGATAAAAGAGAATTCAGTAGCACTGCATTGGCACCTTGTCTATAGAGTATTAACAATG TAAATACAACAGTATACAAAGAGTTAAGAAAAGATATGGCACTTACTTCTCGGTGTCCAA TCCTGCATACTTAAAGAGGTGGTCTGAGTTAATATTTTACAATACATTTTTTGGCCATGT GACATTTAATAAAAAAACACGAGGATTCCGAAGAAGGATTTTGGAACCTTCCTTAATACC AACCCCCCTCCCTAGAATATTATATTTAAACCTGGTTCCCCTCCCTTAGGCGCCTTCTAA TCCACCCACATCCACCCACCAGTCCCCTCCTCCCCACAACTTTTATCCCGGTCTCGCACT CACGCTCCCCCAACTATACGTCCTTCAACACATACCAAAAATA |
| GenBank Accession | BX546528 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:20294664 - go to primer design |
| BLAST e Value | 2e-83 |
| Hit Clone Code (BAC ID) | F20D21 |
| Hit Gene Code | At1g54370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | sodium hydrogen exchanger 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MQJ16
| Sequence (A. th genome BLAST matches underlined) | >40-012060-strizhov-H5-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACATGGGTACCCGGGTATCACATTGTCGTTTCCCGCCTTC GGTTAAACTATCAGTGTTTGACAGATATATTGGCGGGTGGGACTCCTGCCTATTGTGACT CAGAATATTTACTGTTATGCATTAGATTTCCATGTACTTCTAATTATATAAACTCTTAAT CCTGATTGTATGATCTCTTTGTAAATTATGTGAGTCTTTTTTTTTTTTTAAACATCGTGC GAATGATGGAAAAGCGAAAGAGGCGGGCTTTTCAAAAGAAAAGTCTTTACACTGGAAATT CGCGCAACCCCCTCTTAAAGGATTTGATCGCAAGTACAATCGAGCCGACGTTCACGGTAC CGGGCCCCCCCTCGAGGTCGATCCAACCCCTCCGCTGCTATAGTGCAGTCGGCTTTTGAC GTTCAATGCAGCCGTCTTCTGAAAACGACATGTCGCACAAGTCCTAAGTTACCCGACAGG CTGCCGCCCTGCCCTTTTCCTGGCTGGGATCCTCCCTATATAGAGTCCCAATCCTAAACA CCCCCGGGGAAACAAAAACCTGAAAATTCAC |
| GenBank Accession | FR802845 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:7509521 - go to primer design |
| BLAST e Value | 4e-10 |
| Hit Clone Code (BAC ID) | MQJ16 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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