SimpleSearch - Line and FST details
Line specific information
| Line ID | 095G03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409099) |
| Segregation Analysis | 50:41:40 |
| Confirmed for Hit | At5g33370 At4g26415 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3491, 8233, 9806 |
Gene hit At5g33370
| Sequence (A. th genome BLAST matches underlined) | >23-012025-strizhov-G3-8409 NTGATCCATGTAGATTGTCCCGGACATGAAGCACTTTACAATTGAATATGTCCTGAAAGT GACGATGGCCCCACCTTATGACTCTCGCTTGCTTTAAATAGAAGGTCAGGCCATTAACTT ACGCCGCCTGATTCGGCATGTGATCATCGTTGAATCAGCGATGGACACTCTATCTATAGG ATCCTCCCTAGAGCGTATCGAGTAACTCCTGACGCACCTCATAAGATGGGAGATGGTAAC GCGTGACACCCGGGCGGGCTGATGATAAAGGACATCATCTTCAGCGAGACTATGGTCATC ACACGTGTCGTAACAACCGTTTAAGATCCACGGAGCATCGCTCTTGGAACACCGTCTTCT TCATCCTCTATGGGATCCTGGCTATATTGAGATGTTNAAGCTAAGAGGTGTTTTGACAAT CTGAATGCAGCTGAATATTATTAGGATCACAAAGCAGCTGTGCGATCCTCCCTATAGAGA GTCGANTTAACTCAACCGACCGGGAGGGTCCGGCGGATTCTGGTTAGCCTATAGCATATA CCGGTGAGCCCCATACCGGTCCAGAACCTTTGAGGAGATGGCCCCACAACCCCAACCCCT CAGTGGGGGCACATTTCGTTGGTGGTGGAACTTCCCAGCCCTTTGAGGAATGGGGGACCT CAGCGGTGGAGACATCGGCTTTGGCTTCCTTCTACAAAAAGAAACCAAAGGGGGGTAAAA CCCGGTTGGGGGGGGTTAAAACCAACCCCCTCAAAGTAACCCACGGCGGTGTAAGGATTT GGGGGGGAAAATTAAAAACCAAAAAC |
| GenBank Accession | AL770004 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:12604496 - go to primer design |
| BLAST e Value | 3e-23 |
| Hit Clone Code (BAC ID) | F19N2 |
| Hit Gene Code | At5g33370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GDSL-like Lipase/Acylhydrolase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g26415
| Sequence (A. th genome BLAST matches underlined) | >23-012059-strizhov-G3-35St CTGACGAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAACACTACTCAGGGGATATTCACCGGGGTCGATTTGAATGTACGAAACAAGTTATA TGACTACATTTTACAGTGATGAGTTTTTTTGTCCTGATGAGGAATTAAAGACCACCCTAC CTTCTGGTATAACGACAAATTACGATGCGTGGTATATATAAGCAAAAGCAGTAAACGCCA TATTGTAATTCACAAATCTTTCTATCCACTCGCCTACTTTCGCAACCAAATGGGCGCTTA CGTGAAAAACTGAACGAACGATGCCTCAGTTTCGTCATTCACGGCAACCCGTTGACTCTT CTGATAGGCCTGACCATATGCGCACATGATCACTCATACACATAAATCCTGACAGTGTTA ACGTCACATTCGAAAGTATGCCATTACTCTTACCTAATTCACGTCAAATGCT |
| GenBank Accession | AL770005 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:13349842 - go to primer design |
| BLAST e Value | 2e-18 |
| Hit Clone Code (BAC ID) | M3E9 |
| Hit Gene Code | At4g26415 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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