SimpleSearch - Line and FST details


Line specific information

 
Line ID 098C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N409338)
Segregation Analysis 50:5:5
Confirmed for Hit At3g03880
Parent of DUPLO pair 12364
Parent of pair(s) none

Gene hit At2g01960

 
Sequence (A. th genome BLAST matches underlined) 
>11-K012117-022-098-C2-35St
AATTGCCGTAAGGGATGACGCACTATCCACTATCCTTCGCAAGACCCTTCCTCTATATAA
GGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCC
TTCGATGCCAAGAGTGGAATTGAGCAATTTCACAACAGTAAATAAAGGAATCACAAAGTT
AACCTGGAGAATCTATGGGATCCTCCCTATAGTGAGTCGTTNTTACTCAAGNNNNNNNGN
NGNNNNGTTATCTTNCCTCNCCTCTTTGTTTAGATNGATCACTGATTCATAGATGATTTT
GATCGAATAGATTAGCGATTTGGTTCATGACAGTTGCTATTTTTTCGACTATAGAATATA
TATAGATCAATAAAAACTAGGTTACAAAGTTATCTTAATTAATTACCAAAAAAAGAAGAT
AACTCTCTAAAGTAGAAGGAAGAGATAGACTTCACCTAAACAAACATAGCTCTCTTCTAT
AAATCATATCACAGAAGACAAACTGCCACAAAACATTTTAACAAAA
GenBank Accession AL755478 [GenBank]
Graphic View Graphic view of gene At2g01960
Predicted Position of Insertion Chr2:451681 - go to primer design
BLAST e Value 5e-96
Hit Clone Code (BAC ID) F14H20
Hit Gene Code At2g01960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation tetraspanin14
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g03880

 
Sequence (A. th genome BLAST matches underlined) 
>11-012075-strizhov-C2-8409
TTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGCATTG
CCACCGTAACGATCATAGATCATTGCCGTTTCAAAGGTGGTCCTTCACGATTTCTTGTAA
CCCACAATGTTGCATTGACCGTCTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCA
AAAGAGGAGAGGGATTATACTACGAGAGGGNGAGAGGATAACATTGGGAAAGATTGTTTA
GATGGAAACATCAATGGAGAAGATAGCAACAACAAGGAAAAGAGTATGTGGGCTAAGCTC
TTTATAACATTATCAAACAAAGAGAAAGAAGAAGATTTGATGGCTATGAAAGGTTGCAAA
GCTTCTCATGGGCCTAAGAAGAGAGCTAAACTCATCCAGAGAAGCTTGCTTGGGAGGGTA
ACCATAATGTTTTTTTGAAGTTTTTAGAAAAGTGTTATGAAAAATCTTTAAAGTGGGTGT
GGAAAAGATTAGAGAAAAAATGGGGGTGGCTTGAATTTAAACAAGTGGGTGAAGCCCTGG
AAAAATGGGTTGGCTGGATTTGCGCCCCTGAAAAAATCCAATGGTAAGGAAAAAAAAAAA
CCTTTAAGAAGGGATAAACCTGTTTTATCAAGTCTCATTGCCAGGGATCCACTCAAATAG
CGAATTGAAAATTGGATTTGGGGTTTACCTTTTGGGAAAGAAAAATGAAAAATGGA
GenBank Accession AL755477 [GenBank]
Graphic View Graphic view of gene At3g03880
Predicted Position of Insertion Chr3:998319 - go to primer design
BLAST e Value 3e-100
Hit Clone Code (BAC ID) F20H23
Hit Gene Code At3g03880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sterol O-acyltransferase, putative (DUF1639)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37