SimpleSearch - Line and FST details
Line specific information
| Line ID | 099A09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409417) |
| Segregation Analysis | 50:36:35 |
| Confirmed for Hit | F16P2 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit F16P2
| Sequence (A. th genome BLAST matches underlined) | >65-012074-strizhov-A9-8409 TGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGGCGGGT AAACCTAAGAGAAAAGAGCGTTTATTAGAATAATCGGATATTTAAAAGGGCGTGAAAAGG TTTATCCGTTCGTCCATTTGTATGTGCATGCCAACCACAGGGTTCCCCTCGGGAGTGCTT GGCATTCCGTGCGATAATGACTTCTGTTCAACCACCCAAACGTCGGAAAGCCTGACGACG GAGCAGCATTCCAAAAAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCCCTATA GTGAGTCGTATTACTGAGATCTTCAAGATATCCTTGGATACAAAGACAAAGAGAAAGCAA AATGGTCCTTTTATTTATTTGTTTATTTCACCACCCATAACTTCATTTGTGTATAGAATA TAGTAAACTCAAGTAATCAAGCAAGTAAACGAAACATAAAAAAGAAAAGTAGTGCAAGAA ACAGAGGAGTTAGATACCAAAAAGTGAGAGATATCGAATGGCGGAGAAAGAAGAGAGTGT GAAGCTTCTATGGGATCCTCCCTATAGTGAGTCGTATTACCTCAACTCCTCTCCTACAAC CAGCTCTCTCCCCTCCTCTCCAACCGCTTAATCCGACTAAATCTCGTTTGTCTATTCCTT CCT |
| GenBank Accession | AL755541 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:12632560 - go to primer design |
| BLAST e Value | 7e-129 |
| Hit Clone Code (BAC ID) | F16P2 |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g63135
| Sequence (A. th genome BLAST matches underlined) | >65-012118-strizhov-A9-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTACTCAGTGTTTGCTACATGTTTATTGATACATGTCTTCCAATGATAGAAAA CTATGGCACTCTCCCTATTATGAGTTTTATCACTTATAAAGCTATAATGATGATAGTCCA ATGAACACAAATGCATATATCCATATAGTCTACACTGGAAAAACCACTACACTATGGGAT CCTCCCTATAGTGAGCCGCTTTACTAACCGAGTGATCCACACTGGGACTTTTAAACATCA TCCGTCGGATGGTGTTGCGAGAGAACCAATCGATCCGTGAGATCATCCGACGCACCGGGC ATGCGCGCAACACGATCGCATACTATTTGAACGCAAGTACAATCGAGCCGACGTTCACGG TACCGGGCCCACCCTCGAGGTCGATCCAACCCCTACGCTGCTATATGGCAGACAGCTTCT GACGTTCAATGCAACCGCCTTCTGACAACGACATGTCGCACAAGTGCTAAGATACACCAC AAGCTGTCGTACTGCCCTTTTTCTGGAGTTTTCTTGTCCGCGAGACCAATCTGCATAAAG GACAATACTTTGAACTATGGGAACACTCCTATAGAGAGTAGCCTTACCTCAAAAACTGGG CACCTCAATCCCTCCCCACGGGGGCCACGGGNCATTCTTAACTTCTTTCTTCCACCGGGC CCTCTTCCCCGGACCTTGAAAAACTTATCCCTCCTAAACCTGAACTTTTACCTTCCTCCT CTCT |
| GenBank Accession | FR802929 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:25325769 - go to primer design |
| BLAST e Value | 3e-29 |
| Hit Clone Code (BAC ID) | MDC12 |
| Hit Gene Code | At5g63135 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transcription termination factor |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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