SimpleSearch - Line and FST details


Line specific information

 
Line ID 099D10
Vector Used pAC161
Line Availability available as T3 set from NASC (N409454)
Segregation Analysis 50:41:40
Confirmed for Hit At5g41060 At1g60190
Parent of DUPLO pair 2732
Parent of pair(s) none

Gene hit At5g41060

 
Sequence (A. th genome BLAST matches underlined) 
>76-012074-strizhov-D10-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACATGTGGATTTATCCTGCCCCA
TGTCACAACTTTCTTGATATCTCAACAGTTAAGCAGAAACGGGCTATATTGAGAACAGAT
TATTACACCCTTTGGGTACAACGACTCAAGGAACAAACCTCAAAACGTTTAATCCCACTA
TGGGACTCCTCCCTATGGAGAGTCTTTTTACTAATTGCTTGACACGAGAAGTGATCCACC
GACACAGGACTAACCAAAGATCTACCGGGCTTAAGGCACGATCTGACACCGGAAGCGAAC
CACTTTGTGATAGAACTCCGATCATAAGAGTGCCCTGAATCTAAAACCACTGGATCACTC
GCGATCTCTATGGGATCCTCACTATAGTGAGGCGCTGAACTCAGTGATTCAGCGAAACGC
AACGCGTTAATCGCGATTCGGAGTTTGTTAATGAACCAACCTGATAATCACTGGCGGATC
CTCGCCGCCGGAATTGTTCCTGTTCTTCTATGGGATCCTCCCTATAGTGAGTCGATTTAC
TC
GenBank Accession AL755571 [GenBank]
Graphic View Graphic view of gene At5g41060
Predicted Position of Insertion Chr5:16436176 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MEE6
Hit Gene Code At5g41060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DHHC-type zinc finger family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g60190

 
Sequence (A. th genome BLAST matches underlined) 
>76-012074-strizhov-D10-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACATGTGGATTTATCCTGCCCCA
TGTCACAACTTTCTTGATATCTCAACAGTTAAGCAGAAACGGGCTATATTGAGAACAGAT
TATTACACCCTTTGGGTACAACGACTCAAGGAACAAACCTCAAAACGTTTAATCCCACTA
TGGGACTCCTCCCTATGGAGAGTCTTTTTACTAATTGCTTGACACGAGAAGTGATCCACC
GACACAGGACTAACCAAAGATCTACCGGGCTTAAGGCACGATCTGACACCGGAAGCGAAC
CACTTTGTGATAGAACTCCGATCATAAGAGTGCCCTGAATCTAAAACCACTGGATCACTC
GCGATCTCTATGGGATCCTCACTATAGTGAGGCGCTGAACTCAGTGATTCAGCGAAACGC
AACGCGTTAATCGCGATTCGGAGTTTGTTAATGAACCAACCTGATAATCACTGGCGGATC
CTCGCCGCCGGAATTGTTCCTGTTCTTCTATGGGATCCTCCCTATAGTGAGTCGATTTAC
TC
GenBank Accession AL755571 [GenBank]
Graphic View Graphic view of gene At1g60190
Predicted Position of Insertion Chr1:22199607 - go to primer design
BLAST e Value 1e-53
Hit Clone Code (BAC ID) T13D8
Hit Gene Code At1g60190 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ARM repeat superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37