SimpleSearch - Line and FST details
Line specific information
| Line ID | 099H04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409496) |
| Segregation Analysis | 50:25:22 |
| Confirmed for Hit | At2g18960 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5753, 5786, 5790, 5800, 5804, 5836, 10424, 11007, 89126, 89132, 89141 |
Gene hit At2g18960
| Sequence (A. th genome BLAST matches underlined) | >32-012074-strizhov-H4-8409 NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATACAAGGGAAGG ATTGACAACGCAGGAAGGGGAAGACAGGATTGTGATATTTGGCCCCAACAAGCTCGAAGA GAAGAAGGTTTGAGTTTGACTTACCATTGTTGTTTTATCATCATTGAAAGCTTTGGTTTT GTTTAACTCACGAGGTTGATCTTTCGTAAAAAAATATCAGGAAAGCAAAATTCTGAAGTT TCTGGGGTTCATGTGGAATCCGCTTTCATGGGTTATGGAAGCTGCAGCTCTCATGGCCAT TGCTTTGGCTAATGGTGATAATCGACCTCCGGATTGGCAAGATTTTGTGGGTATTATCTG TCTGCTTGTTATCAACTCCACAATCAGTTTCATTGAAGAAAACAACGCCGGAAATGCTGC AGCTGCTCTCATGGCTGGTCTTGCTCCTAAAACCAAGGTAATATGTTGGTGGATGCTGTG ACATTACTGTACAAGATATTTCGAGACTTCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | AL755605 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:8223219 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F19F24 |
| Hit Gene Code | At2g18960 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | H[ ]-ATPase 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g03740
| Sequence (A. th genome BLAST matches underlined) | >32-012118-strizhov-H4-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCT ATGATGCCTATAGCTGTTCCATCTCCTTGCCGAACCATAGACTCATATGGACTAAAGTTA AGCCCTTGAGATCTTTAATAATCAACAAAAACGCAGTGATGTGCTCTCTAGCGCTACATG ACTTGAAAGCAGGCGTAAGATTGAGTCTAATATCCAATACCATATACAGTACTTATAAGC ACAAAACTCGTAAACTTGCTACTCATACAAAGACTGATACTAATACGCACGATGACTACA CCATGAAACCTCCTATGAGCGCTGGGACACTCCATATACAGAACTCTTGTACGAGACTAT CACACGAGAGAAAATTTGCACCACCGGTCAAAGCAGATAACTCTCTGTCAATGACAATGG AGGTCAAGTACTGTAAAAGGTCCTATGGGATCCTCCCTATAGCGAGACGGTTACCCCACC TGCCCTTTTCCTGGCGTTTTCTTGTCGCGGGTTTAATCCCCTAAAGAAAAATACTTGCCA CTATGGGATCCTCCCTTTAGTGAGTCG |
| GenBank Accession | FR802945 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:935771 - go to primer design |
| BLAST e Value | 2e-30 |
| Hit Clone Code (BAC ID) | F21B7 |
| Hit Gene Code | At1g03740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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