SimpleSearch - Line and FST details
Line specific information
| Line ID | 101C11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409635) |
| Segregation Analysis | 100:100:96 |
| Confirmed for Hit | At5g38450 |
| Parent of DUPLO pair | 2527 |
| Parent of pair(s) | none |
Gene hit At1g71360
| Sequence (A. th genome BLAST matches underlined) | >83-K103748-0022-101-C11-8409 AAACTATTATTCACAGAAAACATTTTCTTATGACCAAAATAATTATAAACATTTTCTTTC AATAATTAACCCTATGGGATCCTCCCTATAGTGAGATGGTCCTACCAATCAACAAAAACC CTGCGAAAGTCGCCCACTATGGCATGGGAAATAATAGCGCATTCCTCGTACCCTTACTGC GGAACGACGACACGAAATTGCAAGGCGACCCCCGGGGAACCGACGCAGTAAAAGACCCAT TACGCCTTGCTGTTCCATGATCTTCTTGATTCGCCTATGGGATCCTCCCGAGGGTGAGAT GAGAAACTTCNCGATCGATGCCTGGGTTCCCCCCTTCCAAAAAAAANNANNNNNNNNNNN NNNNNNGGNNANGNGGGGCGCCCCCTGATGGAAAGAGAAAAAACAAATAACCACAGAAAA AAAAGGGAGCTNACAACACAGGAAAAATCATAAAAGGTAAATACGAAGTACAGACCAGAT ATATGCAAACCAAGATAAAGCGCAGAATGAAGACTGGAACATCAAAACCAACACACGTGA CATACCCACAAAACAAGAAAAATTAGAAAATAAGAAACAGTCCGTAAACACTGCATAGGC ACACAAATACGATGCTAATGACTATGAAACAACTTATAACACAGTCGATGTCTGCGATAT GAGCAACACAACAATAAGAATAAAATAATAAACAAAACAAATCGACAAGACCGGAGAATA GATTCACAATTAGGTAAAAAACCCAGACTACAAAGGCAAAAGCACGACAGGAACGAGGTG AGAGAAAAAAGGAACACACAGAACAAAGAGACTAACAGAGGTAGGAAAAAAGTGAAATAT CTATACGAGAAAACAACTGAAAAGATATAAGACATCCCGAAAAACCAACACAGTTCTCAT AGTGTAGTTGGCACAAAAAAAGAAATATAAAACGAGAAGAAGAACATACATCGAAAGTAC AAGGAGAGGACACACAACAAATAGACAAAAAAACTAAAAATGACTGAATATCACGAAACT CGAAAACAAGCAAAGCTAATCACACCGTATACAATAGGAACATAAGATAGGTAAAGATAC AAGAAATAACCATAGATAAAACGCAAATAAAAAGAAATGTAA |
| GenBank Accession | CU589281 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:26891976 - go to primer design |
| BLAST e Value | 8e-34 |
| Hit Clone Code (BAC ID) | F3I17 |
| Hit Gene Code | At1g71360 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Galactose-binding protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CU589280 [GenBank] |
Gene hit At5g38450
| Sequence (A. th genome BLAST matches underlined) | >83-K103746-0022-101-C11-8409 NAGCCATTTACAATTGAATATATCCTGAATCACCAATGTAATCTCTATTTCAATGTATAC ACTTTCATTTACCAAGAGTTTTTTCCTTGTGTACCATTCAAGACTCTTGTATATTGTTCG TACCAAGCACCTCAAAGCTTAACAATGGGACCCACCATGTCATGAGAAATAGAGTCACAA TCCTTGGAAGCTGATTGCGAAACCATGGCCGAGATTTCAAGGATATTTCCGGTTAACGGA CGCGGTTTAGGACCCGTTACGCCTTGCTGTTCCATGATCTTCTTGATTCGTCTATGGGAT CCTCCCTATAGTGAGANGNAAANNNNNNNNNNNANTTGNCNANTTTNNNNNNNNTNNGGG GGGTNNAAGGAGAAANTTTAAGTATGAAGTGGGTGTACTTTCTAGATAAAAGAAAAAATT ANNATNNGTNGTATTTATGGGGGAAGGAATAAAGGGAGTTATTTTAATTGGGAAATGTTT ATTTGGAAGTGTTTTTATTAAAGTGGAAATGGGGGGTTAAATGAAAAAATTGAAGAATGG ATGAGTGATTTAGAAAAAAAAAAAAAAAAAAANNAGNNNGGNNNNNNNGTGGGATNNGAA AAANAAAAAAAGNAAATAATGATAAAATGAGGATAGTTNAATATANAGGTGATAAGTGGT AAAGTAGAAAAAGAGAATTAGGTTATANATGTAAGAAATAGATTTAATAAAATATAAAAA AANAAGAGATTAAAGATTAATTGAATAAGGTGTAAGTAAGAAAATANAAAAGGTTTAGAG AAGAGTGTAAAAGAAAATTGAATNGAATTAAGGTAAAGGATTTGAGATGAGTAAAGAATA AAAAAAATAAGATAGAAAAAAAGATAGTGAAAGTAAATAATTAAGATGAGAAATGAAATA GTAATTGAAGGTGGAAAAGTAAATATTATTAGAAAGAGTGTGAAGATAGATAAATTAAAT GAGAT |
| GenBank Accession | CU589279 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:15396882 - go to primer design |
| BLAST e Value | 4e-63 |
| Hit Clone Code (BAC ID) | MXI10 |
| Hit Gene Code | At5g38450 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 735, subfamily A, polypeptide 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX890748 [GenBank] CU589282 [GenBank] CU589282 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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